Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav13d-3J3QMG8 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav13d-3J3QMG8 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav13d-3J3QMG8 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Trav13d-3J3QMG8 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 Gm7860-201ENSMUST00000121190 879 ntBASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 AC126028.2-201ENSMUST00000228100 1833 ntBASIC16.75■□□□□ 0.27
Trav13d-3J3QMG8 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Gm14281-201ENSMUST00000121700 1294 ntBASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav13d-3J3QMG8 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Gm5540-201ENSMUST00000131852 1848 ntBASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav13d-3J3QMG8 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trav13d-3J3QMG8 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav13d-3J3QMG8 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Trav13d-3J3QMG8 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Trav13d-3J3QMG8 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trav13d-3J3QMG8 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms