Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Msx3P70354 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Msx3P70354 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.65■□□□□ 0.74
Msx3P70354 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Msx3P70354 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Msx3P70354 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
Msx3P70354 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Msx3P70354 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Msx3P70354 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Msx3P70354 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Msx3P70354 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Msx3P70354 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Msx3P70354 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC19.64■□□□□ 0.73
Msx3P70354 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Msx3P70354 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.64■□□□□ 0.73
Msx3P70354 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Msx3P70354 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Msx3P70354 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx3P70354 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx3P70354 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx3P70354 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx3P70354 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx3P70354 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.63■□□□□ 0.73
Msx3P70354 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx3P70354 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Msx3P70354 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx3P70354 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.62■□□□□ 0.73
Msx3P70354 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx3P70354 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Msx3P70354 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx3P70354 Gm27801-201ENSMUST00000184174 223 ntBASIC19.62■□□□□ 0.73
Msx3P70354 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx3P70354 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Msx3P70354 Gm6139-201ENSMUST00000079261 882 ntBASIC19.62■□□□□ 0.73
Msx3P70354 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx3P70354 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Msx3P70354 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Msx3P70354 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.61■□□□□ 0.73
Msx3P70354 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
Msx3P70354 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Msx3P70354 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Msx3P70354 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Msx3P70354 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.6■□□□□ 0.73
Msx3P70354 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.6■□□□□ 0.73
Msx3P70354 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Msx3P70354 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Msx3P70354 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.6■□□□□ 0.73
Msx3P70354 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Msx3P70354 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msx3P70354 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msx3P70354 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Msx3P70354 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msx3P70354 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC19.59■□□□□ 0.73
Msx3P70354 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Msx3P70354 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Msx3P70354 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Msx3P70354 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Msx3P70354 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Msx3P70354 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Msx3P70354 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Msx3P70354 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msx3P70354 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msx3P70354 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Msx3P70354 Gm45417-201ENSMUST00000209533 758 ntBASIC19.58■□□□□ 0.72
Msx3P70354 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msx3P70354 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Msx3P70354 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Msx3P70354 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Msx3P70354 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Msx3P70354 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Msx3P70354 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Msx3P70354 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msx3P70354 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms