Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Tpm1P58771 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.3■■□□□ 1
Tpm1P58771 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Tpm1P58771 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Tpm1P58771 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Tpm1P58771 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Tpm1P58771 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tpm1P58771 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tpm1P58771 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tpm1P58771 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tpm1P58771 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tpm1P58771 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Tpm1P58771 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Tpm1P58771 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Gm35558-201ENSMUST00000222675 2219 ntBASIC21.28■■□□□ 1
Tpm1P58771 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.28■■□□□ 1
Tpm1P58771 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC21.28■■□□□ 1
Tpm1P58771 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Tpm1P58771 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Tpm1P58771 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC21.27■■□□□ 1
Tpm1P58771 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Tpm1P58771 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Tpm1P58771 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC21.27■■□□□ 1
Tpm1P58771 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Tpm1P58771 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Tpm1P58771 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Tpm1P58771 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC21.27■■□□□ 1
Tpm1P58771 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.27■■□□□ 1
Tpm1P58771 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.27■■□□□ 1
Tpm1P58771 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Tpm1P58771 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.27■■□□□ 1
Tpm1P58771 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Tpm1P58771 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Tpm1P58771 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Tpm1P58771 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Tpm1P58771 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Tpm1P58771 Gm42900-201ENSMUST00000197184 2167 ntBASIC21.26■□□□□ 0.99
Tpm1P58771 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Tpm1P58771 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC21.25■□□□□ 0.99
Tpm1P58771 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.25■□□□□ 0.99
Tpm1P58771 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Tpm1P58771 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Tpm1P58771 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 AA386476-201ENSMUST00000098781 1665 ntBASIC21.24■□□□□ 0.99
Tpm1P58771 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Tpm1P58771 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.24■□□□□ 0.99
Tpm1P58771 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Tpm1P58771 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
Tpm1P58771 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tpm1P58771 Shroom3-211ENSMUST00000225438 5742 ntBASIC21.23■□□□□ 0.99
Tpm1P58771 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Tpm1P58771 Gm5540-201ENSMUST00000131852 1848 ntBASIC21.23■□□□□ 0.99
Tpm1P58771 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tpm1P58771 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Tpm1P58771 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Tpm1P58771 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Tpm1P58771 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.23■□□□□ 0.99
Tpm1P58771 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
Tpm1P58771 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.23■□□□□ 0.99
Tpm1P58771 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Tpm1P58771 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Tpm1P58771 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Tpm1P58771 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tpm1P58771 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.22■□□□□ 0.99
Tpm1P58771 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Tpm1P58771 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Tpm1P58771 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Tpm1P58771 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms