Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 Gm13146-201ENSMUST00000118508 780 ntBASIC21.41■■□□□ 1.02
Pcdha4O88689 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.41■■□□□ 1.02
Pcdha4O88689 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.41■■□□□ 1.02
Pcdha4O88689 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha4O88689 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.41■■□□□ 1.02
Pcdha4O88689 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Pcdha4O88689 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pcdha4O88689 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Pcdha4O88689 Gm10849-201ENSMUST00000100397 618 ntBASIC21.4■■□□□ 1.02
Pcdha4O88689 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.4■■□□□ 1.02
Pcdha4O88689 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Pcdha4O88689 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.02
Pcdha4O88689 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Pcdha4O88689 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pcdha4O88689 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha4O88689 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.39■■□□□ 1.01
Pcdha4O88689 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha4O88689 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Pcdha4O88689 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Pcdha4O88689 Gm26571-201ENSMUST00000181399 666 ntBASIC21.39■■□□□ 1.01
Pcdha4O88689 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha4O88689 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha4O88689 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha4O88689 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha4O88689 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha4O88689 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Pcdha4O88689 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Pcdha4O88689 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdha4O88689 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdha4O88689 AV356131-201ENSMUST00000206201 750 ntBASIC21.38■■□□□ 1.01
Pcdha4O88689 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdha4O88689 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdha4O88689 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdha4O88689 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Pcdha4O88689 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha4O88689 Golph3-202ENSMUST00000226517 2359 ntBASIC21.37■■□□□ 1.01
Pcdha4O88689 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Pcdha4O88689 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.37■■□□□ 1.01
Pcdha4O88689 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha4O88689 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha4O88689 Gm37352-201ENSMUST00000193908 2181 ntBASIC21.37■■□□□ 1.01
Pcdha4O88689 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha4O88689 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha4O88689 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha4O88689 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.37■■□□□ 1.01
Pcdha4O88689 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Pcdha4O88689 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.36■■□□□ 1.01
Pcdha4O88689 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha4O88689 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha4O88689 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha4O88689 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Pcdha4O88689 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha4O88689 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha4O88689 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha4O88689 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Pcdha4O88689 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha4O88689 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha4O88689 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.35■■□□□ 1.01
Pcdha4O88689 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.35■■□□□ 1.01
Pcdha4O88689 Gm42569-201ENSMUST00000200539 472 ntBASIC21.35■■□□□ 1.01
Pcdha4O88689 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC21.35■■□□□ 1.01
Pcdha4O88689 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha4O88689 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha4O88689 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha4O88689 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha4O88689 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdha4O88689 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Pcdha4O88689 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Pcdha4O88689 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdha4O88689 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.34■■□□□ 1.01
Pcdha4O88689 Notumos-201ENSMUST00000151998 2659 ntBASIC21.33■■□□□ 1.01
Pcdha4O88689 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha4O88689 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Pcdha4O88689 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha4O88689 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha4O88689 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha4O88689 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha4O88689 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdha4O88689 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Pcdha4O88689 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdha4O88689 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdha4O88689 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms