Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Gm35558-201ENSMUST00000222675 2219 ntBASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
Trav6-1A0A075B5Z8 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav6-1A0A075B5Z8 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Gm38342-201ENSMUST00000195710 2980 ntBASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Gm15820-201ENSMUST00000201566 728 ntBASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Serp2-204ENSMUST00000228055 705 ntBASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav6-1A0A075B5Z8 Gm5540-201ENSMUST00000131852 1848 ntBASIC15.33■□□□□ 0.05
Trav6-1A0A075B5Z8 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.05
Trav6-1A0A075B5Z8 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trav6-1A0A075B5Z8 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Trav6-1A0A075B5Z8 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6-1A0A075B5Z8 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6-1A0A075B5Z8 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Trav6-1A0A075B5Z8 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC15.33■□□□□ 0.04
Trav6-1A0A075B5Z8 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC15.33■□□□□ 0.04
Trav6-1A0A075B5Z8 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trav6-1A0A075B5Z8 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC15.33■□□□□ 0.04
Trav6-1A0A075B5Z8 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 Gm43182-201ENSMUST00000199476 2528 ntBASIC15.32■□□□□ 0.04
Trav6-1A0A075B5Z8 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trav6-1A0A075B5Z8 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms