Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Ddx56Q9D0R4 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ddx56Q9D0R4 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Ddx56Q9D0R4 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Ddx56Q9D0R4 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Ddx56Q9D0R4 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Ddx56Q9D0R4 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
Ddx56Q9D0R4 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Ddx56Q9D0R4 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
Ddx56Q9D0R4 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.72■■□□□ 1.87
Ddx56Q9D0R4 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Ddx56Q9D0R4 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Ddx56Q9D0R4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.71■■□□□ 1.87
Ddx56Q9D0R4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Ddx56Q9D0R4 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Ddx56Q9D0R4 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.7■■□□□ 1.86
Ddx56Q9D0R4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Ddx56Q9D0R4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC26.67■■□□□ 1.86
Ddx56Q9D0R4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ddx56Q9D0R4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Ddx56Q9D0R4 Gm30346-201ENSMUST00000218641 1699 ntBASIC26.66■■□□□ 1.86
Ddx56Q9D0R4 Gm16148-201ENSMUST00000119653 893 ntBASIC26.65■■□□□ 1.86
Ddx56Q9D0R4 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
Ddx56Q9D0R4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC26.64■■□□□ 1.85
Ddx56Q9D0R4 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Ddx56Q9D0R4 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Ddx56Q9D0R4 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Ddx56Q9D0R4 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.6■■□□□ 1.85
Ddx56Q9D0R4 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.59■■□□□ 1.85
Ddx56Q9D0R4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Ddx56Q9D0R4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ddx56Q9D0R4 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
Ddx56Q9D0R4 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
Ddx56Q9D0R4 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ddx56Q9D0R4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
Ddx56Q9D0R4 Zxda-201ENSMUST00000117281 2621 ntBASIC26.54■■□□□ 1.84
Ddx56Q9D0R4 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ddx56Q9D0R4 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ddx56Q9D0R4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ddx56Q9D0R4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ddx56Q9D0R4 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Ddx56Q9D0R4 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
Ddx56Q9D0R4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Ddx56Q9D0R4 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Ddx56Q9D0R4 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Ddx56Q9D0R4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Ddx56Q9D0R4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Ddx56Q9D0R4 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Ddx56Q9D0R4 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
Ddx56Q9D0R4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Ddx56Q9D0R4 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Ddx56Q9D0R4 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Ddx56Q9D0R4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Ddx56Q9D0R4 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Ddx56Q9D0R4 Gm9905-201ENSMUST00000065740 1845 ntBASIC26.42■■□□□ 1.82
Ddx56Q9D0R4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Ddx56Q9D0R4 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC26.4■■□□□ 1.82
Ddx56Q9D0R4 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
Ddx56Q9D0R4 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ddx56Q9D0R4 Gm6206-201ENSMUST00000133472 2199 ntBASIC26.39■■□□□ 1.81
Ddx56Q9D0R4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Ddx56Q9D0R4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ddx56Q9D0R4 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ddx56Q9D0R4 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.36■■□□□ 1.81
Ddx56Q9D0R4 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
Ddx56Q9D0R4 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Ddx56Q9D0R4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx56Q9D0R4 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx56Q9D0R4 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx56Q9D0R4 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ddx56Q9D0R4 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ddx56Q9D0R4 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
Ddx56Q9D0R4 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
Ddx56Q9D0R4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ddx56Q9D0R4 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ddx56Q9D0R4 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Ddx56Q9D0R4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx56Q9D0R4 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx56Q9D0R4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx56Q9D0R4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx56Q9D0R4 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx56Q9D0R4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx56Q9D0R4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddx56Q9D0R4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx56Q9D0R4 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddx56Q9D0R4 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
Ddx56Q9D0R4 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx56Q9D0R4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC26.23■■□□□ 1.79
Ddx56Q9D0R4 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Ddx56Q9D0R4 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Ddx56Q9D0R4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.19■■□□□ 1.78
Ddx56Q9D0R4 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx56Q9D0R4 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx56Q9D0R4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
Ddx56Q9D0R4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Ddx56Q9D0R4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 10.1 ms