Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC24.37■■□□□ 1.49
Lsm1Q8VC85 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC24.37■■□□□ 1.49
Lsm1Q8VC85 Gm6345-201ENSMUST00000180378 1691 ntBASIC24.37■■□□□ 1.49
Lsm1Q8VC85 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Lsm1Q8VC85 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC24.35■■□□□ 1.49
Lsm1Q8VC85 Gm26115-201ENSMUST00000175605 87 ntBASIC24.34■■□□□ 1.49
Lsm1Q8VC85 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Lsm1Q8VC85 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Lsm1Q8VC85 Gm8109-201ENSMUST00000194076 746 ntBASIC24.33■■□□□ 1.49
Lsm1Q8VC85 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Lsm1Q8VC85 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Lsm1Q8VC85 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Lsm1Q8VC85 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Lsm1Q8VC85 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Lsm1Q8VC85 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Lsm1Q8VC85 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
Lsm1Q8VC85 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Lsm1Q8VC85 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Lsm1Q8VC85 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC24.27■■□□□ 1.48
Lsm1Q8VC85 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Lsm1Q8VC85 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
Lsm1Q8VC85 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Lsm1Q8VC85 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Lsm1Q8VC85 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Lsm1Q8VC85 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Lsm1Q8VC85 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Lsm1Q8VC85 Gm30346-201ENSMUST00000218641 1699 ntBASIC24.24■■□□□ 1.47
Lsm1Q8VC85 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
Lsm1Q8VC85 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Lsm1Q8VC85 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Lsm1Q8VC85 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC24.22■■□□□ 1.47
Lsm1Q8VC85 Peli2-204ENSMUST00000226513 1320 ntBASIC24.22■■□□□ 1.47
Lsm1Q8VC85 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Lsm1Q8VC85 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Lsm1Q8VC85 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Lsm1Q8VC85 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Lsm1Q8VC85 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Lsm1Q8VC85 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Lsm1Q8VC85 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Lsm1Q8VC85 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Lsm1Q8VC85 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC24.15■■□□□ 1.46
Lsm1Q8VC85 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Lsm1Q8VC85 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Lsm1Q8VC85 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Lsm1Q8VC85 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Lsm1Q8VC85 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Lsm1Q8VC85 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Lsm1Q8VC85 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
Lsm1Q8VC85 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Lsm1Q8VC85 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Lsm1Q8VC85 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Lsm1Q8VC85 Amer2-203ENSMUST00000225247 2662 ntBASIC24.11■■□□□ 1.45
Lsm1Q8VC85 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
Lsm1Q8VC85 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.44
Lsm1Q8VC85 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Lsm1Q8VC85 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Lsm1Q8VC85 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
Lsm1Q8VC85 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC24.06■■□□□ 1.44
Lsm1Q8VC85 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC24.06■■□□□ 1.44
Lsm1Q8VC85 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC24.05■■□□□ 1.44
Lsm1Q8VC85 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Lsm1Q8VC85 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Lsm1Q8VC85 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Lsm1Q8VC85 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Lsm1Q8VC85 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Lsm1Q8VC85 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Lsm1Q8VC85 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Lsm1Q8VC85 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Lsm1Q8VC85 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
Lsm1Q8VC85 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Lsm1Q8VC85 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Lsm1Q8VC85 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC24■■□□□ 1.43
Lsm1Q8VC85 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Lsm1Q8VC85 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.99■■□□□ 1.43
Lsm1Q8VC85 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
Lsm1Q8VC85 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
Lsm1Q8VC85 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Lsm1Q8VC85 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Lsm1Q8VC85 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC23.97■■□□□ 1.43
Lsm1Q8VC85 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Lsm1Q8VC85 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Lsm1Q8VC85 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Lsm1Q8VC85 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Lsm1Q8VC85 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Lsm1Q8VC85 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Lsm1Q8VC85 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
Lsm1Q8VC85 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Lsm1Q8VC85 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Lsm1Q8VC85 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.92■■□□□ 1.42
Lsm1Q8VC85 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Lsm1Q8VC85 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Lsm1Q8VC85 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Lsm1Q8VC85 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Lsm1Q8VC85 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Lsm1Q8VC85 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC23.88■■□□□ 1.41
Lsm1Q8VC85 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Lsm1Q8VC85 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Lsm1Q8VC85 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Lsm1Q8VC85 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Lsm1Q8VC85 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms