Protein–RNA interactions for Protein: Q8CGV8

Mmp28, Matrix metallopeptidase 28 (epilysin), mousemouse

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp28Q8CGV8 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
Mmp28Q8CGV8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21.36■■□□□ 1.01
Mmp28Q8CGV8 Gm25262-201ENSMUST00000174934 133 ntBASIC21.35■■□□□ 1.01
Mmp28Q8CGV8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Mmp28Q8CGV8 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Mmp28Q8CGV8 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Mmp28Q8CGV8 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Mmp28Q8CGV8 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Mmp28Q8CGV8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC21.31■■□□□ 1
Mmp28Q8CGV8 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.3■■□□□ 1
Mmp28Q8CGV8 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Mmp28Q8CGV8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.29■■□□□ 1
Mmp28Q8CGV8 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.29■■□□□ 1
Mmp28Q8CGV8 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Mmp28Q8CGV8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21.29■■□□□ 1
Mmp28Q8CGV8 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Mmp28Q8CGV8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.29■■□□□ 1
Mmp28Q8CGV8 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Mmp28Q8CGV8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Mmp28Q8CGV8 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Mmp28Q8CGV8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Mmp28Q8CGV8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Mmp28Q8CGV8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Mmp28Q8CGV8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Mmp28Q8CGV8 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Mmp28Q8CGV8 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Mmp28Q8CGV8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Mmp28Q8CGV8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Mmp28Q8CGV8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Mmp28Q8CGV8 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Mmp28Q8CGV8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Mmp28Q8CGV8 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.22■□□□□ 0.99
Mmp28Q8CGV8 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Mmp28Q8CGV8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Mmp28Q8CGV8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Mmp28Q8CGV8 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Mmp28Q8CGV8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Mmp28Q8CGV8 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Mmp28Q8CGV8 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Mmp28Q8CGV8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Mmp28Q8CGV8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Mmp28Q8CGV8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Mmp28Q8CGV8 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Mmp28Q8CGV8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Mmp28Q8CGV8 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Mmp28Q8CGV8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Mmp28Q8CGV8 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Mmp28Q8CGV8 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Mmp28Q8CGV8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp28Q8CGV8 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Mmp28Q8CGV8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Mmp28Q8CGV8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Mmp28Q8CGV8 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Mmp28Q8CGV8 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Mmp28Q8CGV8 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Mmp28Q8CGV8 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.09■□□□□ 0.97
Mmp28Q8CGV8 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Mmp28Q8CGV8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.07■□□□□ 0.96
Mmp28Q8CGV8 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Mmp28Q8CGV8 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Mmp28Q8CGV8 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Mmp28Q8CGV8 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Mmp28Q8CGV8 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Mmp28Q8CGV8 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Mmp28Q8CGV8 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Mmp28Q8CGV8 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Mmp28Q8CGV8 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Mmp28Q8CGV8 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Mmp28Q8CGV8 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Mmp28Q8CGV8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Mmp28Q8CGV8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.98■□□□□ 0.95
Mmp28Q8CGV8 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Mmp28Q8CGV8 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Mmp28Q8CGV8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.96■□□□□ 0.95
Mmp28Q8CGV8 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Mmp28Q8CGV8 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Mmp28Q8CGV8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.94■□□□□ 0.94
Mmp28Q8CGV8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Mmp28Q8CGV8 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Mmp28Q8CGV8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.94■□□□□ 0.94
Mmp28Q8CGV8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Mmp28Q8CGV8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Mmp28Q8CGV8 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Mmp28Q8CGV8 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Mmp28Q8CGV8 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Mmp28Q8CGV8 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Mmp28Q8CGV8 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Mmp28Q8CGV8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Mmp28Q8CGV8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Mmp28Q8CGV8 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Mmp28Q8CGV8 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Mmp28Q8CGV8 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Mmp28Q8CGV8 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Mmp28Q8CGV8 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.87■□□□□ 0.93
Mmp28Q8CGV8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Mmp28Q8CGV8 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.86■□□□□ 0.93
Mmp28Q8CGV8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Mmp28Q8CGV8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
Mmp28Q8CGV8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Mmp28Q8CGV8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms