Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
Trim56Q80VI1 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC30.49■■■□□ 2.47
Trim56Q80VI1 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.47■■■□□ 2.47
Trim56Q80VI1 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.46■■■□□ 2.47
Trim56Q80VI1 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
Trim56Q80VI1 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC30.46■■■□□ 2.47
Trim56Q80VI1 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
Trim56Q80VI1 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Trim56Q80VI1 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Trim56Q80VI1 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Trim56Q80VI1 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim56Q80VI1 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim56Q80VI1 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
Trim56Q80VI1 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Trim56Q80VI1 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Trim56Q80VI1 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Trim56Q80VI1 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Trim56Q80VI1 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Trim56Q80VI1 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Trim56Q80VI1 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim56Q80VI1 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.31■■■□□ 2.44
Trim56Q80VI1 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
Trim56Q80VI1 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
Trim56Q80VI1 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Trim56Q80VI1 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
Trim56Q80VI1 Gm30346-201ENSMUST00000218641 1699 ntBASIC30.3■■■□□ 2.44
Trim56Q80VI1 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC30.29■■■□□ 2.44
Trim56Q80VI1 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Trim56Q80VI1 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC30.28■■■□□ 2.44
Trim56Q80VI1 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Trim56Q80VI1 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Trim56Q80VI1 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim56Q80VI1 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Trim56Q80VI1 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Trim56Q80VI1 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Trim56Q80VI1 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
Trim56Q80VI1 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Trim56Q80VI1 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.2■■■□□ 2.43
Trim56Q80VI1 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Trim56Q80VI1 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Trim56Q80VI1 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Trim56Q80VI1 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
Trim56Q80VI1 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Trim56Q80VI1 Tdp2-203ENSMUST00000223804 1136 ntBASIC30.16■■■□□ 2.42
Trim56Q80VI1 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Trim56Q80VI1 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Trim56Q80VI1 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Trim56Q80VI1 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Trim56Q80VI1 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Trim56Q80VI1 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
Trim56Q80VI1 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
Trim56Q80VI1 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC30.08■■■□□ 2.41
Trim56Q80VI1 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Trim56Q80VI1 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Trim56Q80VI1 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC30.05■■■□□ 2.4
Trim56Q80VI1 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.05■■■□□ 2.4
Trim56Q80VI1 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC30.05■■■□□ 2.4
Trim56Q80VI1 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Trim56Q80VI1 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Trim56Q80VI1 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
Trim56Q80VI1 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC30.03■■■□□ 2.4
Trim56Q80VI1 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC30.02■■■□□ 2.4
Trim56Q80VI1 Gm9397-201ENSMUST00000200125 605 ntBASIC30.02■■■□□ 2.4
Trim56Q80VI1 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
Trim56Q80VI1 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Trim56Q80VI1 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Trim56Q80VI1 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.39
Trim56Q80VI1 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.39
Trim56Q80VI1 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC29.98■■■□□ 2.39
Trim56Q80VI1 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
Trim56Q80VI1 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
Trim56Q80VI1 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
Trim56Q80VI1 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC29.96■■■□□ 2.39
Trim56Q80VI1 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Trim56Q80VI1 Gm45855-201ENSMUST00000212546 880 ntBASIC29.96■■■□□ 2.39
Trim56Q80VI1 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
Trim56Q80VI1 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Trim56Q80VI1 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Trim56Q80VI1 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Trim56Q80VI1 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Trim56Q80VI1 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Trim56Q80VI1 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Trim56Q80VI1 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC29.9■■■□□ 2.38
Trim56Q80VI1 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Trim56Q80VI1 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC29.88■■■□□ 2.37
Trim56Q80VI1 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC29.88■■■□□ 2.37
Trim56Q80VI1 Gm6345-201ENSMUST00000180378 1691 ntBASIC29.88■■■□□ 2.37
Trim56Q80VI1 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
Trim56Q80VI1 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
Trim56Q80VI1 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Trim56Q80VI1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Trim56Q80VI1 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Trim56Q80VI1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Trim56Q80VI1 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
Trim56Q80VI1 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
Trim56Q80VI1 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Trim56Q80VI1 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Trim56Q80VI1 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC29.81■■■□□ 2.36
Trim56Q80VI1 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
Trim56Q80VI1 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms