Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC31.63■■■□□ 2.65
Trim27Q62158 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
Trim27Q62158 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Trim27Q62158 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC31.61■■■□□ 2.65
Trim27Q62158 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Trim27Q62158 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Trim27Q62158 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Trim27Q62158 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Trim27Q62158 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Trim27Q62158 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Trim27Q62158 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
Trim27Q62158 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC31.56■■■□□ 2.64
Trim27Q62158 Gm30346-201ENSMUST00000218641 1699 ntBASIC31.52■■■□□ 2.64
Trim27Q62158 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Trim27Q62158 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Trim27Q62158 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
Trim27Q62158 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Trim27Q62158 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC31.49■■■□□ 2.63
Trim27Q62158 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Trim27Q62158 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Trim27Q62158 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
Trim27Q62158 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
Trim27Q62158 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.46■■■□□ 2.63
Trim27Q62158 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC31.45■■■□□ 2.63
Trim27Q62158 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC31.45■■■□□ 2.63
Trim27Q62158 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Trim27Q62158 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Trim27Q62158 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
Trim27Q62158 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
Trim27Q62158 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Trim27Q62158 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Trim27Q62158 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Trim27Q62158 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
Trim27Q62158 Zxda-201ENSMUST00000117281 2621 ntBASIC31.38■■■□□ 2.61
Trim27Q62158 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
Trim27Q62158 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
Trim27Q62158 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Trim27Q62158 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Trim27Q62158 Gm6345-201ENSMUST00000180378 1691 ntBASIC31.37■■■□□ 2.61
Trim27Q62158 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
Trim27Q62158 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Trim27Q62158 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Trim27Q62158 Gm16148-201ENSMUST00000119653 893 ntBASIC31.33■■■□□ 2.61
Trim27Q62158 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Trim27Q62158 Gm6206-201ENSMUST00000133472 2199 ntBASIC31.3■■■□□ 2.6
Trim27Q62158 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Trim27Q62158 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Trim27Q62158 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Trim27Q62158 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Trim27Q62158 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
Trim27Q62158 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC31.25■■■□□ 2.59
Trim27Q62158 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Trim27Q62158 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Trim27Q62158 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
Trim27Q62158 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
Trim27Q62158 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Trim27Q62158 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
Trim27Q62158 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Trim27Q62158 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Trim27Q62158 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
Trim27Q62158 Gm9905-201ENSMUST00000065740 1845 ntBASIC31.19■■■□□ 2.58
Trim27Q62158 Gm43445-201ENSMUST00000198564 2091 ntBASIC31.19■■■□□ 2.58
Trim27Q62158 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
Trim27Q62158 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC31.16■■■□□ 2.58
Trim27Q62158 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Trim27Q62158 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Trim27Q62158 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
Trim27Q62158 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
Trim27Q62158 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Trim27Q62158 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Trim27Q62158 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC31.09■■■□□ 2.57
Trim27Q62158 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Trim27Q62158 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC31.07■■■□□ 2.56
Trim27Q62158 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Trim27Q62158 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC31.06■■■□□ 2.56
Trim27Q62158 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Trim27Q62158 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Trim27Q62158 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Trim27Q62158 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
Trim27Q62158 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Trim27Q62158 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Trim27Q62158 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
Trim27Q62158 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
Trim27Q62158 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC31.01■■■□□ 2.55
Trim27Q62158 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Trim27Q62158 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Trim27Q62158 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Trim27Q62158 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Trim27Q62158 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
Trim27Q62158 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Trim27Q62158 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Trim27Q62158 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Trim27Q62158 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Trim27Q62158 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Trim27Q62158 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC30.95■■■□□ 2.55
Trim27Q62158 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Trim27Q62158 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Trim27Q62158 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Trim27Q62158 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Trim27Q62158 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms