Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav3-3Q5R1C3 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav3-3Q5R1C3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Trav3-3Q5R1C3 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav3-3Q5R1C3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav3-3Q5R1C3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav3-3Q5R1C3 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav3-3Q5R1C3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav3-3Q5R1C3 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav3-3Q5R1C3 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav3-3Q5R1C3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC18.71■□□□□ 0.59
Trav3-3Q5R1C3 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trav3-3Q5R1C3 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav3-3Q5R1C3 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trav3-3Q5R1C3 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Trav3-3Q5R1C3 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav3-3Q5R1C3 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav3-3Q5R1C3 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav3-3Q5R1C3 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav3-3Q5R1C3 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.67■□□□□ 0.58
Trav3-3Q5R1C3 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
Trav3-3Q5R1C3 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav3-3Q5R1C3 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC18.67■□□□□ 0.58
Trav3-3Q5R1C3 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Trav3-3Q5R1C3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Trav3-3Q5R1C3 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Trav3-3Q5R1C3 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav3-3Q5R1C3 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav3-3Q5R1C3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav3-3Q5R1C3 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav3-3Q5R1C3 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav3-3Q5R1C3 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav3-3Q5R1C3 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav3-3Q5R1C3 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav3-3Q5R1C3 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav3-3Q5R1C3 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Trav3-3Q5R1C3 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav3-3Q5R1C3 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Trav3-3Q5R1C3 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav3-3Q5R1C3 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav3-3Q5R1C3 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav3-3Q5R1C3 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trav3-3Q5R1C3 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav3-3Q5R1C3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC18.57■□□□□ 0.56
Trav3-3Q5R1C3 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav3-3Q5R1C3 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav3-3Q5R1C3 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav3-3Q5R1C3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Trav3-3Q5R1C3 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trav3-3Q5R1C3 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav3-3Q5R1C3 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trav3-3Q5R1C3 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav3-3Q5R1C3 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav3-3Q5R1C3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav3-3Q5R1C3 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav3-3Q5R1C3 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav3-3Q5R1C3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav3-3Q5R1C3 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav3-3Q5R1C3 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trav3-3Q5R1C3 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav3-3Q5R1C3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav3-3Q5R1C3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC18.52■□□□□ 0.56
Trav3-3Q5R1C3 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Trav3-3Q5R1C3 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trav3-3Q5R1C3 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav3-3Q5R1C3 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav3-3Q5R1C3 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav3-3Q5R1C3 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trav3-3Q5R1C3 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trav3-3Q5R1C3 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav3-3Q5R1C3 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav3-3Q5R1C3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC18.48■□□□□ 0.55
Trav3-3Q5R1C3 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav3-3Q5R1C3 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav3-3Q5R1C3 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav3-3Q5R1C3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Trav3-3Q5R1C3 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav3-3Q5R1C3 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav3-3Q5R1C3 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav3-3Q5R1C3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav3-3Q5R1C3 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav3-3Q5R1C3 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Trav3-3Q5R1C3 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav3-3Q5R1C3 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trav3-3Q5R1C3 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Trav3-3Q5R1C3 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trav3-3Q5R1C3 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav3-3Q5R1C3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav3-3Q5R1C3 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav3-3Q5R1C3 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav3-3Q5R1C3 Rab21-202ENSMUST00000218831 843 ntBASIC18.41■□□□□ 0.54
Trav3-3Q5R1C3 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav3-3Q5R1C3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Trav3-3Q5R1C3 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trav3-3Q5R1C3 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trav3-3Q5R1C3 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav3-3Q5R1C3 AC122428.3-201ENSMUST00000215551 2290 ntBASIC18.38■□□□□ 0.53
Trav3-3Q5R1C3 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav3-3Q5R1C3 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.38■□□□□ 0.53
Trav3-3Q5R1C3 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms