Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC32,01■■■□□ 2,72
Rnf180Q3U827 Gm42809-201ENSMUST00000198429 1138 ntBASIC32■■■□□ 2,71
Rnf180Q3U827 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC31,99■■■□□ 2,71
Rnf180Q3U827 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC31,99■■■□□ 2,71
Rnf180Q3U827 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31,98■■■□□ 2,71
Rnf180Q3U827 Zfp131-207ENSMUST00000224946 1783 ntBASIC31,96■■■□□ 2,71
Rnf180Q3U827 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC31,96■■■□□ 2,71
Rnf180Q3U827 Cap2-205ENSMUST00000225824 1634 ntBASIC31,96■■■□□ 2,71
Rnf180Q3U827 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC31,96■■■□□ 2,71
Rnf180Q3U827 Gm43863-201ENSMUST00000203822 1192 ntBASIC31,93■■■□□ 2,7
Rnf180Q3U827 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC31,93■■■□□ 2,7
Rnf180Q3U827 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC31,91■■■□□ 2,7
Rnf180Q3U827 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC31,9■■■□□ 2,7
Rnf180Q3U827 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC31,9■■■□□ 2,7
Rnf180Q3U827 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC31,88■■■□□ 2,69
Rnf180Q3U827 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31,88■■■□□ 2,69
Rnf180Q3U827 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31,87■■■□□ 2,69
Rnf180Q3U827 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31,86■■■□□ 2,69
Rnf180Q3U827 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC31,85■■■□□ 2,69
Rnf180Q3U827 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC31,84■■■□□ 2,69
Rnf180Q3U827 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC31,84■■■□□ 2,69
Rnf180Q3U827 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC31,83■■■□□ 2,69
Rnf180Q3U827 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC31,83■■■□□ 2,69
Rnf180Q3U827 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC31,82■■■□□ 2,68
Rnf180Q3U827 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC31,82■■■□□ 2,68
Rnf180Q3U827 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC31,81■■■□□ 2,68
Rnf180Q3U827 Gm11175-201ENSMUST00000116172 543 ntBASIC31,81■■■□□ 2,68
Rnf180Q3U827 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC31,8■■■□□ 2,68
Rnf180Q3U827 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC31,8■■■□□ 2,68
Rnf180Q3U827 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC31,8■■■□□ 2,68
Rnf180Q3U827 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC31,78■■■□□ 2,68
Rnf180Q3U827 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC31,77■■■□□ 2,68
Rnf180Q3U827 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC31,77■■■□□ 2,68
Rnf180Q3U827 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC31,76■■■□□ 2,67
Rnf180Q3U827 Gm11599-201ENSMUST00000118720 878 ntBASIC31,74■■■□□ 2,67
Rnf180Q3U827 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC31,72■■■□□ 2,67
Rnf180Q3U827 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC31,72■■■□□ 2,67
Rnf180Q3U827 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC31,72■■■□□ 2,67
Rnf180Q3U827 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31,71■■■□□ 2,67
Rnf180Q3U827 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC31,7■■■□□ 2,67
Rnf180Q3U827 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC31,69■■■□□ 2,66
Rnf180Q3U827 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31,69■■■□□ 2,66
Rnf180Q3U827 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC31,69■■■□□ 2,66
Rnf180Q3U827 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC31,68■■■□□ 2,66
Rnf180Q3U827 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC31,68■■■□□ 2,66
Rnf180Q3U827 Nkain2-201ENSMUST00000092602 558 ntBASIC31,67■■■□□ 2,66
Rnf180Q3U827 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC31,65■■■□□ 2,66
Rnf180Q3U827 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC31,64■■■□□ 2,66
Rnf180Q3U827 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC31,63■■■□□ 2,65
Rnf180Q3U827 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC31,63■■■□□ 2,65
Rnf180Q3U827 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC31,61■■■□□ 2,65
Rnf180Q3U827 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC31,61■■■□□ 2,65
Rnf180Q3U827 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31,6■■■□□ 2,65
Rnf180Q3U827 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC31,6■■■□□ 2,65
Rnf180Q3U827 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC31,6■■■□□ 2,65
Rnf180Q3U827 AC157572.2-201ENSMUST00000226970 908 ntBASIC31,59■■■□□ 2,65
Rnf180Q3U827 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC31,59■■■□□ 2,65
Rnf180Q3U827 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC31,57■■■□□ 2,64
Rnf180Q3U827 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC31,57■■■□□ 2,64
Rnf180Q3U827 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC31,56■■■□□ 2,64
Rnf180Q3U827 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC31,55■■■□□ 2,64
Rnf180Q3U827 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC31,55■■■□□ 2,64
Rnf180Q3U827 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC31,54■■■□□ 2,64
Rnf180Q3U827 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC31,52■■■□□ 2,64
Rnf180Q3U827 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31,52■■■□□ 2,64
Rnf180Q3U827 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC31,5■■■□□ 2,63
Rnf180Q3U827 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC31,49■■■□□ 2,63
Rnf180Q3U827 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC31,46■■■□□ 2,63
Rnf180Q3U827 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC31,45■■■□□ 2,63
Rnf180Q3U827 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC31,45■■■□□ 2,63
Rnf180Q3U827 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC31,44■■■□□ 2,62
Rnf180Q3U827 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC31,43■■■□□ 2,62
Rnf180Q3U827 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC31,43■■■□□ 2,62
Rnf180Q3U827 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC31,39■■■□□ 2,62
Rnf180Q3U827 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC31,39■■■□□ 2,62
Rnf180Q3U827 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC31,37■■■□□ 2,61
Rnf180Q3U827 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC31,35■■■□□ 2,61
Rnf180Q3U827 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC31,35■■■□□ 2,61
Rnf180Q3U827 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC31,35■■■□□ 2,61
Rnf180Q3U827 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC31,34■■■□□ 2,61
Rnf180Q3U827 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC31,33■■■□□ 2,61
Rnf180Q3U827 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC31,32■■■□□ 2,6
Rnf180Q3U827 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC31,3■■■□□ 2,6
Rnf180Q3U827 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31,3■■■□□ 2,6
Rnf180Q3U827 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC31,3■■■□□ 2,6
Rnf180Q3U827 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC31,29■■■□□ 2,6
Rnf180Q3U827 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC31,27■■■□□ 2,6
Rnf180Q3U827 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC31,26■■■□□ 2,59
Rnf180Q3U827 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31,24■■■□□ 2,59
Rnf180Q3U827 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC31,22■■■□□ 2,59
Rnf180Q3U827 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC31,21■■■□□ 2,59
Rnf180Q3U827 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC31,21■■■□□ 2,59
Rnf180Q3U827 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC31,21■■■□□ 2,59
Rnf180Q3U827 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC31,19■■■□□ 2,58
Rnf180Q3U827 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC31,19■■■□□ 2,58
Rnf180Q3U827 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC31,19■■■□□ 2,58
Rnf180Q3U827 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC31,19■■■□□ 2,58
Rnf180Q3U827 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC31,17■■■□□ 2,58
Rnf180Q3U827 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC31,16■■■□□ 2,58
Rnf180Q3U827 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC31,15■■■□□ 2,58
Retrieved 100 of 76,532 protein–RNA pairs in 50,5 ms