Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Slc6a1P31648 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Slc6a1P31648 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Slc6a1P31648 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Slc6a1P31648 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Slc6a1P31648 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Slc6a1P31648 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Slc6a1P31648 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Slc6a1P31648 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.6■■□□□ 1.05
Slc6a1P31648 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Slc6a1P31648 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC21.6■■□□□ 1.05
Slc6a1P31648 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Slc6a1P31648 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Slc6a1P31648 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Slc6a1P31648 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Slc6a1P31648 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Slc6a1P31648 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.58■■□□□ 1.04
Slc6a1P31648 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21.57■■□□□ 1.04
Slc6a1P31648 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Slc6a1P31648 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.56■■□□□ 1.04
Slc6a1P31648 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Slc6a1P31648 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
Slc6a1P31648 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Slc6a1P31648 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Slc6a1P31648 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC21.52■■□□□ 1.04
Slc6a1P31648 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Slc6a1P31648 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Slc6a1P31648 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Slc6a1P31648 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Slc6a1P31648 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Slc6a1P31648 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Slc6a1P31648 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Slc6a1P31648 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Slc6a1P31648 Gm8109-201ENSMUST00000194076 746 ntBASIC21.44■■□□□ 1.02
Slc6a1P31648 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Slc6a1P31648 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Slc6a1P31648 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC21.43■■□□□ 1.02
Slc6a1P31648 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Slc6a1P31648 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Slc6a1P31648 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Slc6a1P31648 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Slc6a1P31648 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Slc6a1P31648 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Slc6a1P31648 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC21.41■■□□□ 1.02
Slc6a1P31648 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Slc6a1P31648 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Slc6a1P31648 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Slc6a1P31648 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Slc6a1P31648 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Slc6a1P31648 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Slc6a1P31648 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.39■■□□□ 1.01
Slc6a1P31648 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Slc6a1P31648 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Slc6a1P31648 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Slc6a1P31648 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Slc6a1P31648 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Slc6a1P31648 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Slc6a1P31648 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Slc6a1P31648 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Slc6a1P31648 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Slc6a1P31648 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Slc6a1P31648 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Slc6a1P31648 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Slc6a1P31648 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Slc6a1P31648 Gm6345-201ENSMUST00000180378 1691 ntBASIC21.33■■□□□ 1
Slc6a1P31648 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC21.32■■□□□ 1
Slc6a1P31648 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Slc6a1P31648 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Slc6a1P31648 Gm17082-201ENSMUST00000166043 1091 ntBASIC21.3■■□□□ 1
Slc6a1P31648 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Slc6a1P31648 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.29■■□□□ 1
Slc6a1P31648 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Slc6a1P31648 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Slc6a1P31648 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC21.27■■□□□ 1
Slc6a1P31648 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Slc6a1P31648 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.27■■□□□ 1
Slc6a1P31648 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Slc6a1P31648 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Slc6a1P31648 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Slc6a1P31648 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Slc6a1P31648 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Slc6a1P31648 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Slc6a1P31648 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Slc6a1P31648 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Slc6a1P31648 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Slc6a1P31648 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Slc6a1P31648 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Slc6a1P31648 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Slc6a1P31648 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Slc6a1P31648 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Slc6a1P31648 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Slc6a1P31648 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Slc6a1P31648 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Slc6a1P31648 Gm27322-201ENSMUST00000184007 104 ntBASIC21.19■□□□□ 0.98
Slc6a1P31648 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Slc6a1P31648 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Slc6a1P31648 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Slc6a1P31648 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Slc6a1P31648 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Slc6a1P31648 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 8.7 ms