Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Col3a1P08121 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Col3a1P08121 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Col3a1P08121 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC31.39■■■□□ 2.62
Col3a1P08121 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col3a1P08121 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Col3a1P08121 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Col3a1P08121 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
Col3a1P08121 Gm24970-201ENSMUST00000175582 82 ntBASIC31.33■■■□□ 2.61
Col3a1P08121 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col3a1P08121 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col3a1P08121 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Col3a1P08121 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC31.32■■■□□ 2.6
Col3a1P08121 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col3a1P08121 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col3a1P08121 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Col3a1P08121 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC31.28■■■□□ 2.6
Col3a1P08121 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Col3a1P08121 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
Col3a1P08121 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Col3a1P08121 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC31.27■■■□□ 2.6
Col3a1P08121 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
Col3a1P08121 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Col3a1P08121 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
Col3a1P08121 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC31.25■■■□□ 2.59
Col3a1P08121 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC31.24■■■□□ 2.59
Col3a1P08121 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Col3a1P08121 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Col3a1P08121 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Col3a1P08121 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC31.24■■■□□ 2.59
Col3a1P08121 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.23■■■□□ 2.59
Col3a1P08121 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Col3a1P08121 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Col3a1P08121 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC31.22■■■□□ 2.59
Col3a1P08121 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Col3a1P08121 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
Col3a1P08121 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Col3a1P08121 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Col3a1P08121 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Col3a1P08121 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
Col3a1P08121 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
Col3a1P08121 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Col3a1P08121 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
Col3a1P08121 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC31.1■■■□□ 2.57
Col3a1P08121 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.09■■■□□ 2.57
Col3a1P08121 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Col3a1P08121 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
Col3a1P08121 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Col3a1P08121 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Col3a1P08121 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
Col3a1P08121 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Col3a1P08121 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
Col3a1P08121 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
Col3a1P08121 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Col3a1P08121 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC31.05■■■□□ 2.56
Col3a1P08121 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Col3a1P08121 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Col3a1P08121 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
Col3a1P08121 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC31.02■■■□□ 2.56
Col3a1P08121 Gm30346-201ENSMUST00000218641 1699 ntBASIC31.02■■■□□ 2.56
Col3a1P08121 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Col3a1P08121 Gm43863-201ENSMUST00000203822 1192 ntBASIC31■■■□□ 2.55
Col3a1P08121 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC31■■■□□ 2.55
Col3a1P08121 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30.99■■■□□ 2.55
Col3a1P08121 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
Col3a1P08121 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Col3a1P08121 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
Col3a1P08121 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Col3a1P08121 Gm6658-202ENSMUST00000209493 1885 ntBASIC30.96■■■□□ 2.55
Col3a1P08121 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Col3a1P08121 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Col3a1P08121 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Col3a1P08121 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC30.87■■■□□ 2.53
Col3a1P08121 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
Col3a1P08121 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Col3a1P08121 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC30.84■■■□□ 2.53
Col3a1P08121 AC157572.2-201ENSMUST00000226970 908 ntBASIC30.83■■■□□ 2.53
Col3a1P08121 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
Col3a1P08121 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Col3a1P08121 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC30.82■■■□□ 2.52
Col3a1P08121 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Col3a1P08121 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Col3a1P08121 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC30.79■■■□□ 2.52
Col3a1P08121 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Col3a1P08121 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Col3a1P08121 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Col3a1P08121 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30.76■■■□□ 2.52
Col3a1P08121 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Col3a1P08121 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
Col3a1P08121 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Col3a1P08121 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Col3a1P08121 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Col3a1P08121 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC30.71■■■□□ 2.51
Col3a1P08121 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Col3a1P08121 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Col3a1P08121 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Col3a1P08121 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col3a1P08121 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
Col3a1P08121 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
Col3a1P08121 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms