Protein–RNA interactions for Protein: A0A0B4J1K4

Trav19, T cell receptor alpha variable 19 (Fragment), mousemouse

Predictions only

Length 119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav19A0A0B4J1K4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav19A0A0B4J1K4 Gm6345-201ENSMUST00000180378 1691 ntBASIC18.76■□□□□ 0.59
Trav19A0A0B4J1K4 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC18.74■□□□□ 0.59
Trav19A0A0B4J1K4 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav19A0A0B4J1K4 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav19A0A0B4J1K4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
Trav19A0A0B4J1K4 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav19A0A0B4J1K4 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav19A0A0B4J1K4 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trav19A0A0B4J1K4 Gm25262-201ENSMUST00000174934 133 ntBASIC18.71■□□□□ 0.59
Trav19A0A0B4J1K4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trav19A0A0B4J1K4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav19A0A0B4J1K4 Amer2-203ENSMUST00000225247 2662 ntBASIC18.69■□□□□ 0.58
Trav19A0A0B4J1K4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav19A0A0B4J1K4 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trav19A0A0B4J1K4 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav19A0A0B4J1K4 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav19A0A0B4J1K4 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav19A0A0B4J1K4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav19A0A0B4J1K4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav19A0A0B4J1K4 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav19A0A0B4J1K4 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC18.65■□□□□ 0.58
Trav19A0A0B4J1K4 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav19A0A0B4J1K4 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Trav19A0A0B4J1K4 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav19A0A0B4J1K4 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav19A0A0B4J1K4 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav19A0A0B4J1K4 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav19A0A0B4J1K4 AC166822.3-201ENSMUST00000227394 661 ntBASIC18.63■□□□□ 0.57
Trav19A0A0B4J1K4 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav19A0A0B4J1K4 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC18.63■□□□□ 0.57
Trav19A0A0B4J1K4 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav19A0A0B4J1K4 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav19A0A0B4J1K4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav19A0A0B4J1K4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trav19A0A0B4J1K4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
Trav19A0A0B4J1K4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Trav19A0A0B4J1K4 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC18.6■□□□□ 0.57
Trav19A0A0B4J1K4 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav19A0A0B4J1K4 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Trav19A0A0B4J1K4 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav19A0A0B4J1K4 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC18.58■□□□□ 0.57
Trav19A0A0B4J1K4 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Trav19A0A0B4J1K4 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav19A0A0B4J1K4 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav19A0A0B4J1K4 Fezf2-202ENSMUST00000224023 1917 ntBASIC18.57■□□□□ 0.56
Trav19A0A0B4J1K4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav19A0A0B4J1K4 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC18.57■□□□□ 0.56
Trav19A0A0B4J1K4 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav19A0A0B4J1K4 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav19A0A0B4J1K4 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
Trav19A0A0B4J1K4 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
Trav19A0A0B4J1K4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav19A0A0B4J1K4 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.55■□□□□ 0.56
Trav19A0A0B4J1K4 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav19A0A0B4J1K4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav19A0A0B4J1K4 Gm27322-201ENSMUST00000184007 104 ntBASIC18.53■□□□□ 0.56
Trav19A0A0B4J1K4 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav19A0A0B4J1K4 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav19A0A0B4J1K4 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav19A0A0B4J1K4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav19A0A0B4J1K4 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Trav19A0A0B4J1K4 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.52■□□□□ 0.55
Trav19A0A0B4J1K4 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Trav19A0A0B4J1K4 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC18.51■□□□□ 0.55
Trav19A0A0B4J1K4 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav19A0A0B4J1K4 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav19A0A0B4J1K4 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav19A0A0B4J1K4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav19A0A0B4J1K4 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.49■□□□□ 0.55
Trav19A0A0B4J1K4 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav19A0A0B4J1K4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav19A0A0B4J1K4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
Trav19A0A0B4J1K4 Gm17082-201ENSMUST00000166043 1091 ntBASIC18.47■□□□□ 0.55
Trav19A0A0B4J1K4 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav19A0A0B4J1K4 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.47■□□□□ 0.55
Trav19A0A0B4J1K4 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav19A0A0B4J1K4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav19A0A0B4J1K4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav19A0A0B4J1K4 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav19A0A0B4J1K4 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav19A0A0B4J1K4 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Trav19A0A0B4J1K4 Gm30346-201ENSMUST00000218641 1699 ntBASIC18.45■□□□□ 0.54
Trav19A0A0B4J1K4 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav19A0A0B4J1K4 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav19A0A0B4J1K4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC18.44■□□□□ 0.54
Trav19A0A0B4J1K4 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav19A0A0B4J1K4 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trav19A0A0B4J1K4 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav19A0A0B4J1K4 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav19A0A0B4J1K4 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav19A0A0B4J1K4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav19A0A0B4J1K4 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav19A0A0B4J1K4 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav19A0A0B4J1K4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav19A0A0B4J1K4 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav19A0A0B4J1K4 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav19A0A0B4J1K4 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav19A0A0B4J1K4 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav19A0A0B4J1K4 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms