Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC133637.1-201ENST00000624115 1537 ntBASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CLHC1Q8NHS4 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.77■□□□□ 0.91
CLHC1Q8NHS4 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.77■□□□□ 0.91
CLHC1Q8NHS4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.76■□□□□ 0.91
CLHC1Q8NHS4 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CLHC1Q8NHS4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 MIR3621-201ENST00000580529 85 ntBASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLHC1Q8NHS4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.73■□□□□ 0.91
CLHC1Q8NHS4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLHC1Q8NHS4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CLHC1Q8NHS4 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CLHC1Q8NHS4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.7■□□□□ 0.91
CLHC1Q8NHS4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLHC1Q8NHS4 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms