Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Gm27801-201ENSMUST00000184174 223 ntBASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.22■□□□□ 0.99
Trim9Q8C7M3 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 CT030146.1-201ENSMUST00000220919 217 ntBASIC21.21■□□□□ 0.99
Trim9Q8C7M3 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim9Q8C7M3 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim9Q8C7M3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim9Q8C7M3 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim9Q8C7M3 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim9Q8C7M3 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim9Q8C7M3 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Trim9Q8C7M3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms