Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim47Q8C0E3 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
Trim47Q8C0E3 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim47Q8C0E3 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim47Q8C0E3 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim47Q8C0E3 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim47Q8C0E3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC21.33■■□□□ 1.01
Trim47Q8C0E3 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
Trim47Q8C0E3 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trim47Q8C0E3 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trim47Q8C0E3 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim47Q8C0E3 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim47Q8C0E3 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim47Q8C0E3 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim47Q8C0E3 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim47Q8C0E3 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.32■■□□□ 1
Trim47Q8C0E3 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim47Q8C0E3 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim47Q8C0E3 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim47Q8C0E3 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim47Q8C0E3 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Trim47Q8C0E3 Gm13146-201ENSMUST00000118508 780 ntBASIC21.31■■□□□ 1
Trim47Q8C0E3 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim47Q8C0E3 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.31■■□□□ 1
Trim47Q8C0E3 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.31■■□□□ 1
Trim47Q8C0E3 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.31■■□□□ 1
Trim47Q8C0E3 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.31■■□□□ 1
Trim47Q8C0E3 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim47Q8C0E3 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.3■■□□□ 1
Trim47Q8C0E3 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim47Q8C0E3 Gm7860-201ENSMUST00000121190 879 ntBASIC21.3■■□□□ 1
Trim47Q8C0E3 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.3■■□□□ 1
Trim47Q8C0E3 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim47Q8C0E3 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.3■■□□□ 1
Trim47Q8C0E3 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.3■■□□□ 1
Trim47Q8C0E3 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trim47Q8C0E3 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim47Q8C0E3 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Trim47Q8C0E3 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim47Q8C0E3 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim47Q8C0E3 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim47Q8C0E3 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim47Q8C0E3 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.29■■□□□ 1
Trim47Q8C0E3 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim47Q8C0E3 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.29■■□□□ 1
Trim47Q8C0E3 Ap3s1-204ENSMUST00000225520 957 ntBASIC21.29■■□□□ 1
Trim47Q8C0E3 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim47Q8C0E3 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim47Q8C0E3 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim47Q8C0E3 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim47Q8C0E3 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Trim47Q8C0E3 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim47Q8C0E3 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
Trim47Q8C0E3 Gm37179-201ENSMUST00000194862 823 ntBASIC21.28■■□□□ 1
Trim47Q8C0E3 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim47Q8C0E3 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.28■■□□□ 1
Trim47Q8C0E3 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim47Q8C0E3 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim47Q8C0E3 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim47Q8C0E3 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trim47Q8C0E3 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim47Q8C0E3 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Trim47Q8C0E3 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim47Q8C0E3 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim47Q8C0E3 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim47Q8C0E3 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms