Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.89■□□□□ 0.77
Rnf40Q3U319 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rnf40Q3U319 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rnf40Q3U319 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Rnf40Q3U319 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rnf40Q3U319 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rnf40Q3U319 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rnf40Q3U319 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rnf40Q3U319 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.87■□□□□ 0.77
Rnf40Q3U319 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Rnf40Q3U319 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Rnf40Q3U319 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rnf40Q3U319 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rnf40Q3U319 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rnf40Q3U319 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC19.85■□□□□ 0.77
Rnf40Q3U319 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Rnf40Q3U319 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rnf40Q3U319 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rnf40Q3U319 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.84■□□□□ 0.77
Rnf40Q3U319 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.84■□□□□ 0.77
Rnf40Q3U319 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Rnf40Q3U319 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.83■□□□□ 0.77
Rnf40Q3U319 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Rnf40Q3U319 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.83■□□□□ 0.77
Rnf40Q3U319 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Rnf40Q3U319 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Rnf40Q3U319 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.83■□□□□ 0.77
Rnf40Q3U319 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.83■□□□□ 0.76
Rnf40Q3U319 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rnf40Q3U319 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rnf40Q3U319 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rnf40Q3U319 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rnf40Q3U319 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Rnf40Q3U319 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.82■□□□□ 0.76
Rnf40Q3U319 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Rnf40Q3U319 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Rnf40Q3U319 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.81■□□□□ 0.76
Rnf40Q3U319 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rnf40Q3U319 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rnf40Q3U319 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rnf40Q3U319 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rnf40Q3U319 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Rnf40Q3U319 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Rnf40Q3U319 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rnf40Q3U319 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms