Protein–RNA interactions for Protein: Q99PF4

Cdh23, Cadherin-23, mousemouse

Predictions only

Length 3,354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh23Q99PF4 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cdh23Q99PF4 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Cdh23Q99PF4 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh23Q99PF4 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Cdh23Q99PF4 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh23Q99PF4 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Cdh23Q99PF4 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh23Q99PF4 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh23Q99PF4 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cdh23Q99PF4 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Cdh23Q99PF4 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdh23Q99PF4 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20■□□□□ 0.79
Cdh23Q99PF4 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20■□□□□ 0.79
Cdh23Q99PF4 CT010444.2-201ENSMUST00000217877 1629 ntBASIC20■□□□□ 0.79
Cdh23Q99PF4 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdh23Q99PF4 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC20■□□□□ 0.79
Cdh23Q99PF4 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cdh23Q99PF4 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdh23Q99PF4 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Cdh23Q99PF4 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
Cdh23Q99PF4 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.99■□□□□ 0.79
Cdh23Q99PF4 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdh23Q99PF4 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Cdh23Q99PF4 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Cdh23Q99PF4 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.98■□□□□ 0.79
Cdh23Q99PF4 Gm9987-201ENSMUST00000069768 567 ntBASIC19.98■□□□□ 0.79
Cdh23Q99PF4 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdh23Q99PF4 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdh23Q99PF4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cdh23Q99PF4 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Mir5122-201ENSMUST00000175004 89 ntBASIC19.97■□□□□ 0.79
Cdh23Q99PF4 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Mir1199-201ENSMUST00000117015 119 ntBASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Gm21362-201ENSMUST00000194272 928 ntBASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdh23Q99PF4 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh23Q99PF4 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh23Q99PF4 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh23Q99PF4 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh23Q99PF4 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh23Q99PF4 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Cdh23Q99PF4 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdh23Q99PF4 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Gm2559-201ENSMUST00000201323 363 ntBASIC19.94■□□□□ 0.78
Cdh23Q99PF4 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdh23Q99PF4 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Gm10517-202ENSMUST00000192970 758 ntBASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdh23Q99PF4 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC19.92■□□□□ 0.78
Cdh23Q99PF4 Dio3-201ENSMUST00000097228 1449 ntBASIC19.92■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms