Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Smarca1Q6PGB8 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Smarca1Q6PGB8 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Smarca1Q6PGB8 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smarca1Q6PGB8 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.49■■□□□ 1.03
Smarca1Q6PGB8 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smarca1Q6PGB8 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Smarca1Q6PGB8 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Smarca1Q6PGB8 Gm5874-201ENSMUST00000096101 508 ntBASIC21.49■■□□□ 1.03
Smarca1Q6PGB8 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Smarca1Q6PGB8 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Smarca1Q6PGB8 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Smarca1Q6PGB8 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC21.48■■□□□ 1.03
Smarca1Q6PGB8 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Smarca1Q6PGB8 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smarca1Q6PGB8 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smarca1Q6PGB8 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Smarca1Q6PGB8 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.47■■□□□ 1.03
Smarca1Q6PGB8 Gm10493-201ENSMUST00000097270 612 ntBASIC21.47■■□□□ 1.03
Smarca1Q6PGB8 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Smarca1Q6PGB8 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.47■■□□□ 1.03
Smarca1Q6PGB8 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Smarca1Q6PGB8 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
Smarca1Q6PGB8 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Smarca1Q6PGB8 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Smarca1Q6PGB8 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Smarca1Q6PGB8 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Smarca1Q6PGB8 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smarca1Q6PGB8 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smarca1Q6PGB8 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Smarca1Q6PGB8 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smarca1Q6PGB8 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smarca1Q6PGB8 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Smarca1Q6PGB8 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
Smarca1Q6PGB8 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Smarca1Q6PGB8 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Smarca1Q6PGB8 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smarca1Q6PGB8 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.42■■□□□ 1.02
Smarca1Q6PGB8 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smarca1Q6PGB8 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Smarca1Q6PGB8 AA386476-201ENSMUST00000098781 1665 ntBASIC21.42■■□□□ 1.02
Smarca1Q6PGB8 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Smarca1Q6PGB8 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Smarca1Q6PGB8 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Smarca1Q6PGB8 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smarca1Q6PGB8 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.4■■□□□ 1.02
Smarca1Q6PGB8 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Smarca1Q6PGB8 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.4■■□□□ 1.02
Smarca1Q6PGB8 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smarca1Q6PGB8 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Smarca1Q6PGB8 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Smarca1Q6PGB8 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Smarca1Q6PGB8 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Smarca1Q6PGB8 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms