Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm10231-201ENSMUST00000181584 441 ntBASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Gm18666-201ENSMUST00000190039 958 ntBASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Gm10175-202ENSMUST00000208752 441 ntBASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col27a1Q5QNQ9 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col27a1Q5QNQ9 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col27a1Q5QNQ9 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col27a1Q5QNQ9 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col27a1Q5QNQ9 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col27a1Q5QNQ9 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Gm15378-201ENSMUST00000121894 207 ntBASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Col27a1Q5QNQ9 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Col27a1Q5QNQ9 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col27a1Q5QNQ9 Gm13158-201ENSMUST00000122007 736 ntBASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC18.97■□□□□ 0.63
Col27a1Q5QNQ9 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
Col27a1Q5QNQ9 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col27a1Q5QNQ9 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.96■□□□□ 0.63
Col27a1Q5QNQ9 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Col27a1Q5QNQ9 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Col27a1Q5QNQ9 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.96■□□□□ 0.63
Col27a1Q5QNQ9 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col27a1Q5QNQ9 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col27a1Q5QNQ9 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Gm44549-201ENSMUST00000208351 577 ntBASIC18.95■□□□□ 0.62
Col27a1Q5QNQ9 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col27a1Q5QNQ9 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Gm6433-201ENSMUST00000118634 875 ntBASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms