Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cacna1bO55017 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.69■□□□□ 0.58
Cacna1bO55017 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cacna1bO55017 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cacna1bO55017 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cacna1bO55017 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.69■□□□□ 0.58
Cacna1bO55017 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.69■□□□□ 0.58
Cacna1bO55017 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cacna1bO55017 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cacna1bO55017 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cacna1bO55017 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cacna1bO55017 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cacna1bO55017 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cacna1bO55017 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cacna1bO55017 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.68■□□□□ 0.58
Cacna1bO55017 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
Cacna1bO55017 Gm6576-201ENSMUST00000169678 883 ntBASIC18.68■□□□□ 0.58
Cacna1bO55017 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cacna1bO55017 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cacna1bO55017 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cacna1bO55017 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC18.67■□□□□ 0.58
Cacna1bO55017 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cacna1bO55017 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cacna1bO55017 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cacna1bO55017 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cacna1bO55017 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cacna1bO55017 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cacna1bO55017 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cacna1bO55017 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Cacna1bO55017 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cacna1bO55017 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cacna1bO55017 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cacna1bO55017 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Cacna1bO55017 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cacna1bO55017 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cacna1bO55017 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cacna1bO55017 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.66■□□□□ 0.58
Cacna1bO55017 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.66■□□□□ 0.58
Cacna1bO55017 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Cacna1bO55017 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.65■□□□□ 0.58
Cacna1bO55017 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC18.65■□□□□ 0.58
Cacna1bO55017 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Cacna1bO55017 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Cacna1bO55017 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cacna1bO55017 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cacna1bO55017 Gm26766-202ENSMUST00000227544 2347 ntBASIC18.64■□□□□ 0.57
Cacna1bO55017 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cacna1bO55017 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Cacna1bO55017 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Cacna1bO55017 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cacna1bO55017 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cacna1bO55017 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cacna1bO55017 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.63■□□□□ 0.57
Cacna1bO55017 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Cacna1bO55017 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Cacna1bO55017 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Cacna1bO55017 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.63■□□□□ 0.57
Cacna1bO55017 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Cacna1bO55017 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cacna1bO55017 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.62■□□□□ 0.57
Cacna1bO55017 Rab3c-203ENSMUST00000224180 967 ntBASIC18.62■□□□□ 0.57
Cacna1bO55017 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC18.62■□□□□ 0.57
Cacna1bO55017 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cacna1bO55017 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cacna1bO55017 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.61■□□□□ 0.57
Cacna1bO55017 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cacna1bO55017 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.61■□□□□ 0.57
Cacna1bO55017 Arhgef33-211ENSMUST00000225658 473 ntBASIC18.61■□□□□ 0.57
Cacna1bO55017 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cacna1bO55017 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cacna1bO55017 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms