Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.08■□□□□ 0.97
PCDHGA1Q9Y5H4 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.08■□□□□ 0.96
PCDHGA1Q9Y5H4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.08■□□□□ 0.96
PCDHGA1Q9Y5H4 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHGA1Q9Y5H4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHGA1Q9Y5H4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHGA1Q9Y5H4 TSPY6P-201ENST00000448518 926 ntBASIC21.07■□□□□ 0.96
PCDHGA1Q9Y5H4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.07■□□□□ 0.96
PCDHGA1Q9Y5H4 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PCDHGA1Q9Y5H4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
PCDHGA1Q9Y5H4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 AC083906.2-201ENST00000511578 360 ntBASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PCDHGA1Q9Y5H4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 KRT18P6-201ENST00000555540 1265 ntBASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
PCDHGA1Q9Y5H4 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 TSPY20P-201ENST00000450910 630 ntBASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 AL050303.2-201ENST00000619798 666 ntBASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 KRT87P-202ENST00000534226 1464 ntBASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.04■□□□□ 0.96
PCDHGA1Q9Y5H4 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 AC007322.1-201ENST00000426983 750 ntBASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 AC066615.1-201ENST00000640911 628 ntBASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 AC020928.2-201ENST00000588717 2197 ntBASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PCDHGA1Q9Y5H4 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 SLC7A5P2-201ENST00000553010 536 ntBASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 DUX4L16-201ENST00000555130 1264 ntBASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 AC005181.1-201ENST00000604782 1256 ntBASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 AC009237.3-201ENST00000393279 1427 ntBASIC21.02■□□□□ 0.96
PCDHGA1Q9Y5H4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
PCDHGA1Q9Y5H4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.95
PCDHGA1Q9Y5H4 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PCDHGA1Q9Y5H4 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms