Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
HMGN4O00479 AC099791.2-201ENST00000605725 427 ntBASIC20.35■□□□□ 0.85
HMGN4O00479 pRNA.6-201ENST00000610482 90 ntBASIC20.35■□□□□ 0.85
HMGN4O00479 pRNA.5-201ENST00000612139 90 ntBASIC20.35■□□□□ 0.85
HMGN4O00479 pRNA.11-201ENST00000618423 90 ntBASIC20.35■□□□□ 0.85
HMGN4O00479 pRNA.13-201ENST00000619112 90 ntBASIC20.35■□□□□ 0.85
HMGN4O00479 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.35■□□□□ 0.85
HMGN4O00479 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
HMGN4O00479 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.35■□□□□ 0.85
HMGN4O00479 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGN4O00479 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGN4O00479 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGN4O00479 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGN4O00479 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.34■□□□□ 0.85
HMGN4O00479 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGN4O00479 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
HMGN4O00479 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
HMGN4O00479 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HMGN4O00479 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HMGN4O00479 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.34■□□□□ 0.85
HMGN4O00479 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGN4O00479 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HMGN4O00479 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGN4O00479 FBXW4P1-201ENST00000426721 2239 ntBASIC20.33■□□□□ 0.85
HMGN4O00479 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGN4O00479 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGN4O00479 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
HMGN4O00479 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.33■□□□□ 0.85
HMGN4O00479 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.33■□□□□ 0.85
HMGN4O00479 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HMGN4O00479 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.33■□□□□ 0.85
HMGN4O00479 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
HMGN4O00479 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HMGN4O00479 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HMGN4O00479 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HMGN4O00479 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HMGN4O00479 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGN4O00479 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGN4O00479 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HMGN4O00479 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGN4O00479 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.32■□□□□ 0.84
HMGN4O00479 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.32■□□□□ 0.84
HMGN4O00479 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.32■□□□□ 0.84
HMGN4O00479 AL512631.2-201ENST00000604634 923 ntBASIC20.32■□□□□ 0.84
HMGN4O00479 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HMGN4O00479 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.31■□□□□ 0.84
HMGN4O00479 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HMGN4O00479 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
HMGN4O00479 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGN4O00479 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGN4O00479 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HMGN4O00479 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.31■□□□□ 0.84
HMGN4O00479 AL031602.1-201ENST00000633169 911 ntBASIC20.31■□□□□ 0.84
HMGN4O00479 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.31■□□□□ 0.84
HMGN4O00479 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
HMGN4O00479 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
HMGN4O00479 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGN4O00479 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HMGN4O00479 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.31■□□□□ 0.84
HMGN4O00479 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HMGN4O00479 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HMGN4O00479 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGN4O00479 AC007375.3-201ENST00000600936 2314 ntBASIC20.3■□□□□ 0.84
HMGN4O00479 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGN4O00479 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HMGN4O00479 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGN4O00479 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
HMGN4O00479 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGN4O00479 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGN4O00479 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGN4O00479 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGN4O00479 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
HMGN4O00479 AL356441.2-201ENST00000443009 864 ntBASIC20.29■□□□□ 0.84
HMGN4O00479 MIR3181-201ENST00000578512 73 ntBASIC20.29■□□□□ 0.84
HMGN4O00479 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGN4O00479 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGN4O00479 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGN4O00479 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGN4O00479 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGN4O00479 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGN4O00479 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGN4O00479 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGN4O00479 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGN4O00479 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGN4O00479 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGN4O00479 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGN4O00479 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGN4O00479 SRD5A1P1-201ENST00000442297 786 ntBASIC20.28■□□□□ 0.84
HMGN4O00479 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGN4O00479 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGN4O00479 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms