Protein–RNA interactions for Protein: A0A075B624

Trav15d-1-dv6d-1, T cell receptor alpha variable 15D-1-DV6D-1 (Fragment), mousemouse

Predictions only

Length 124 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15d-1-dv6d-1A0A075B624 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Gm18755-201ENSMUST00000218030 1099 ntBASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trav15d-1-dv6d-1A0A075B624 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Gm10657-201ENSMUST00000193528 1031 ntBASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC16.44■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 AC126028.2-201ENSMUST00000228100 1833 ntBASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Gm5784-201ENSMUST00000179344 2478 ntBASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Golph3-205ENSMUST00000228671 2842 ntBASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC16.42■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Trav15d-1-dv6d-1A0A075B624 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms