Protein–RNA interactions for Protein: Q80YF6

Upk3b, Uroplakin-3b, mousemouse

Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3bQ80YF6 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upk3bQ80YF6 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upk3bQ80YF6 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC16.43■□□□□ 0.22
Upk3bQ80YF6 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Upk3bQ80YF6 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Upk3bQ80YF6 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Upk3bQ80YF6 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upk3bQ80YF6 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upk3bQ80YF6 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Etf1-202ENSMUST00000180351 108 ntBASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upk3bQ80YF6 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Gm10657-201ENSMUST00000193528 1031 ntBASIC16.41■□□□□ 0.22
Upk3bQ80YF6 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upk3bQ80YF6 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upk3bQ80YF6 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upk3bQ80YF6 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upk3bQ80YF6 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upk3bQ80YF6 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Upk3bQ80YF6 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Upk3bQ80YF6 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upk3bQ80YF6 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upk3bQ80YF6 AC122335.2-201ENSMUST00000213901 6181 ntBASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Gm18755-201ENSMUST00000218030 1099 ntBASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upk3bQ80YF6 AC126028.2-201ENSMUST00000228100 1833 ntBASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Upk3bQ80YF6 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC16.37■□□□□ 0.21
Upk3bQ80YF6 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Upk3bQ80YF6 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upk3bQ80YF6 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upk3bQ80YF6 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Upk3bQ80YF6 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms