Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Usf1Q61069 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Gm6211-202ENSMUST00000167849 925 ntBASIC17.86■□□□□ 0.45
Usf1Q61069 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.86■□□□□ 0.45
Usf1Q61069 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Usf1Q61069 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Usf1Q61069 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Usf1Q61069 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.86■□□□□ 0.45
Usf1Q61069 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Usf1Q61069 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.85■□□□□ 0.45
Usf1Q61069 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Usf1Q61069 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Usf1Q61069 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usf1Q61069 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Usf1Q61069 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usf1Q61069 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Usf1Q61069 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.84■□□□□ 0.45
Usf1Q61069 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usf1Q61069 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.84■□□□□ 0.45
Usf1Q61069 Gm37856-201ENSMUST00000191634 999 ntBASIC17.84■□□□□ 0.45
Usf1Q61069 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.84■□□□□ 0.45
Usf1Q61069 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.84■□□□□ 0.45
Usf1Q61069 Gm20634-201ENSMUST00000090779 2956 ntBASIC17.84■□□□□ 0.45
Usf1Q61069 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usf1Q61069 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Usf1Q61069 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Usf1Q61069 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Usf1Q61069 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Usf1Q61069 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.83■□□□□ 0.45
Usf1Q61069 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usf1Q61069 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.83■□□□□ 0.44
Usf1Q61069 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usf1Q61069 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usf1Q61069 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Usf1Q61069 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usf1Q61069 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Usf1Q61069 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Usf1Q61069 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC17.83■□□□□ 0.44
Usf1Q61069 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usf1Q61069 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usf1Q61069 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.82■□□□□ 0.44
Usf1Q61069 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Usf1Q61069 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.82■□□□□ 0.44
Usf1Q61069 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usf1Q61069 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usf1Q61069 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Usf1Q61069 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Usf1Q61069 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Usf1Q61069 Gm13534-201ENSMUST00000121169 513 ntBASIC17.81■□□□□ 0.44
Usf1Q61069 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.81■□□□□ 0.44
Usf1Q61069 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usf1Q61069 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usf1Q61069 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usf1Q61069 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usf1Q61069 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usf1Q61069 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usf1Q61069 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Usf1Q61069 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Usf1Q61069 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Usf1Q61069 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Usf1Q61069 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.81■□□□□ 0.44
Usf1Q61069 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.8■□□□□ 0.44
Usf1Q61069 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC17.8■□□□□ 0.44
Usf1Q61069 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.8■□□□□ 0.44
Usf1Q61069 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.8■□□□□ 0.44
Usf1Q61069 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.8■□□□□ 0.44
Usf1Q61069 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Usf1Q61069 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Usf1Q61069 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Usf1Q61069 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms