Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXA3O43365 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXA3O43365 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HOXA3O43365 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HOXA3O43365 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.69■□□□□ 0.42
HOXA3O43365 TERF1P2-201ENST00000583350 1212 ntBASIC17.69■□□□□ 0.42
HOXA3O43365 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXA3O43365 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXA3O43365 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXA3O43365 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.69■□□□□ 0.42
HOXA3O43365 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXA3O43365 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXA3O43365 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXA3O43365 AC004687.1-201ENST00000579003 1625 ntBASIC17.69■□□□□ 0.42
HOXA3O43365 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.68■□□□□ 0.42
HOXA3O43365 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.68■□□□□ 0.42
HOXA3O43365 AC004812.2-201ENST00000611079 2094 ntBASIC17.68■□□□□ 0.42
HOXA3O43365 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXA3O43365 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXA3O43365 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HOXA3O43365 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXA3O43365 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HOXA3O43365 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
HOXA3O43365 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.68■□□□□ 0.42
HOXA3O43365 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXA3O43365 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.68■□□□□ 0.42
HOXA3O43365 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXA3O43365 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXA3O43365 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HOXA3O43365 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17.67■□□□□ 0.42
HOXA3O43365 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HOXA3O43365 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA3O43365 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA3O43365 AC004911.1-201ENST00000416316 871 ntBASIC17.67■□□□□ 0.42
HOXA3O43365 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXA3O43365 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.67■□□□□ 0.42
HOXA3O43365 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.67■□□□□ 0.42
HOXA3O43365 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.67■□□□□ 0.42
HOXA3O43365 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA3O43365 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.67■□□□□ 0.42
HOXA3O43365 AC092437.1-201ENST00000624794 1048 ntBASIC17.67■□□□□ 0.42
HOXA3O43365 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC17.67■□□□□ 0.42
HOXA3O43365 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HOXA3O43365 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA3O43365 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA3O43365 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC17.67■□□□□ 0.42
HOXA3O43365 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA3O43365 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA3O43365 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA3O43365 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HOXA3O43365 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.66■□□□□ 0.42
HOXA3O43365 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXA3O43365 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.66■□□□□ 0.42
HOXA3O43365 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.66■□□□□ 0.42
HOXA3O43365 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA3O43365 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXA3O43365 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HOXA3O43365 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA3O43365 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA3O43365 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA3O43365 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXA3O43365 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.66■□□□□ 0.42
HOXA3O43365 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.65■□□□□ 0.42
HOXA3O43365 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXA3O43365 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
HOXA3O43365 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXA3O43365 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXA3O43365 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HOXA3O43365 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA3O43365 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HOXA3O43365 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
HOXA3O43365 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
HOXA3O43365 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXA3O43365 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXA3O43365 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXA3O43365 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
HOXA3O43365 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HOXA3O43365 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.64■□□□□ 0.41
HOXA3O43365 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXA3O43365 AL139125.2-201ENST00000623134 1869 ntBASIC17.64■□□□□ 0.41
HOXA3O43365 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXA3O43365 ABCB10P4-201ENST00000566803 2184 ntBASIC17.64■□□□□ 0.41
HOXA3O43365 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXA3O43365 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXA3O43365 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
HOXA3O43365 AL353803.4-201ENST00000565882 1934 ntBASIC17.64■□□□□ 0.41
HOXA3O43365 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HOXA3O43365 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXA3O43365 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms