Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col13a1Q9R1N9 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col13a1Q9R1N9 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col13a1Q9R1N9 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col13a1Q9R1N9 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col13a1Q9R1N9 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col13a1Q9R1N9 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC16.64■□□□□ 0.25
Col13a1Q9R1N9 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Gm13234-201ENSMUST00000120010 747 ntBASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Gm20760-201ENSMUST00000179197 648 ntBASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Col13a1Q9R1N9 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Reep4-203ENSMUST00000226563 1444 ntBASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Gm7514-201ENSMUST00000209475 934 ntBASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col13a1Q9R1N9 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Mir5133-201ENSMUST00000174955 77 ntBASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Gm4968-201ENSMUST00000071458 858 ntBASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col13a1Q9R1N9 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Gm8520-201ENSMUST00000186517 868 ntBASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col13a1Q9R1N9 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col13a1Q9R1N9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms