Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Golph3-205ENSMUST00000228671 2842 ntBASIC20.23■□□□□ 0.83
Six1Q62231 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Six1Q62231 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.23■□□□□ 0.83
Six1Q62231 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Six1Q62231 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Six1Q62231 AA386476-201ENSMUST00000098781 1665 ntBASIC20.22■□□□□ 0.83
Six1Q62231 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Six1Q62231 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Six1Q62231 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six1Q62231 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six1Q62231 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Six1Q62231 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six1Q62231 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six1Q62231 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Six1Q62231 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Six1Q62231 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Six1Q62231 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six1Q62231 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Six1Q62231 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Six1Q62231 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six1Q62231 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six1Q62231 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.21■□□□□ 0.83
Six1Q62231 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
Six1Q62231 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Six1Q62231 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Six1Q62231 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Six1Q62231 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.2■□□□□ 0.83
Six1Q62231 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Six1Q62231 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Six1Q62231 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.2■□□□□ 0.82
Six1Q62231 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.2■□□□□ 0.82
Six1Q62231 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.2■□□□□ 0.82
Six1Q62231 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Six1Q62231 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Six1Q62231 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
Six1Q62231 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.19■□□□□ 0.82
Six1Q62231 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Six1Q62231 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.19■□□□□ 0.82
Six1Q62231 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Six1Q62231 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Six1Q62231 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Six1Q62231 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six1Q62231 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six1Q62231 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Six1Q62231 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
Six1Q62231 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Six1Q62231 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six1Q62231 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six1Q62231 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six1Q62231 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six1Q62231 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Six1Q62231 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.17■□□□□ 0.82
Six1Q62231 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
Six1Q62231 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Six1Q62231 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC20.17■□□□□ 0.82
Six1Q62231 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.17■□□□□ 0.82
Six1Q62231 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.17■□□□□ 0.82
Six1Q62231 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Six1Q62231 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six1Q62231 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six1Q62231 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six1Q62231 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Six1Q62231 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Six1Q62231 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Six1Q62231 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Six1Q62231 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Six1Q62231 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Six1Q62231 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Six1Q62231 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Six1Q62231 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.15■□□□□ 0.82
Six1Q62231 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.15■□□□□ 0.82
Six1Q62231 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Six1Q62231 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Six1Q62231 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.15■□□□□ 0.82
Six1Q62231 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Six1Q62231 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
Six1Q62231 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Six1Q62231 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Six1Q62231 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Six1Q62231 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Six1Q62231 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Six1Q62231 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms