Protein–RNA interactions for Protein: O55055

Trdmt1, tRNA (cytosine(38)-C(5))-methyltransferase, mousemouse

Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdmt1O55055 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Trdmt1O55055 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trdmt1O55055 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trdmt1O55055 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Trdmt1O55055 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trdmt1O55055 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trdmt1O55055 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.78■■□□□ 1.08
Trdmt1O55055 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Trdmt1O55055 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.78■■□□□ 1.08
Trdmt1O55055 Gm38205-201ENSMUST00000192243 258 ntBASIC21.78■■□□□ 1.08
Trdmt1O55055 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.78■■□□□ 1.08
Trdmt1O55055 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.78■■□□□ 1.08
Trdmt1O55055 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Trdmt1O55055 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trdmt1O55055 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trdmt1O55055 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trdmt1O55055 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trdmt1O55055 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Trdmt1O55055 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trdmt1O55055 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trdmt1O55055 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.77■■□□□ 1.08
Trdmt1O55055 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trdmt1O55055 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trdmt1O55055 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
Trdmt1O55055 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Trdmt1O55055 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Gm4968-201ENSMUST00000071458 858 ntBASIC21.76■■□□□ 1.07
Trdmt1O55055 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trdmt1O55055 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
Trdmt1O55055 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Trdmt1O55055 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
Trdmt1O55055 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trdmt1O55055 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Trdmt1O55055 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trdmt1O55055 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Trdmt1O55055 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trdmt1O55055 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trdmt1O55055 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trdmt1O55055 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Trdmt1O55055 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC21.75■■□□□ 1.07
Trdmt1O55055 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trdmt1O55055 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trdmt1O55055 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Trdmt1O55055 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC21.74■■□□□ 1.07
Trdmt1O55055 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trdmt1O55055 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trdmt1O55055 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trdmt1O55055 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC21.74■■□□□ 1.07
Trdmt1O55055 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.74■■□□□ 1.07
Trdmt1O55055 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trdmt1O55055 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trdmt1O55055 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Trdmt1O55055 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trdmt1O55055 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trdmt1O55055 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Trdmt1O55055 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.73■■□□□ 1.07
Trdmt1O55055 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trdmt1O55055 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trdmt1O55055 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Trdmt1O55055 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.73■■□□□ 1.07
Trdmt1O55055 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.72■■□□□ 1.07
Trdmt1O55055 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
Trdmt1O55055 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
Trdmt1O55055 AA386476-201ENSMUST00000098781 1665 ntBASIC21.72■■□□□ 1.07
Trdmt1O55055 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trdmt1O55055 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trdmt1O55055 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trdmt1O55055 Gm10653-202ENSMUST00000139570 835 ntBASIC21.71■■□□□ 1.07
Trdmt1O55055 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trdmt1O55055 Gm3807-201ENSMUST00000193520 1168 ntBASIC21.71■■□□□ 1.07
Trdmt1O55055 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.71■■□□□ 1.07
Trdmt1O55055 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trdmt1O55055 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trdmt1O55055 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trdmt1O55055 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trdmt1O55055 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms