Protein–RNA interactions for Protein: O55055

Trdmt1, tRNA (cytosine(38)-C(5))-methyltransferase, mousemouse

Predictions only

Length 415 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdmt1O55055 Gm25239-201ENSMUST00000174915 86 ntBASIC43.97■■■■■ 4.63
Trdmt1O55055 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40.74■■■■■ 4.11
Trdmt1O55055 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC40.16■■■■■ 4.02
Trdmt1O55055 Gm15042-201ENSMUST00000120212 883 ntBASIC38.24■■■■□ 3.71
Trdmt1O55055 Gm24109-201ENSMUST00000175489 103 ntBASIC38.19■■■■□ 3.7
Trdmt1O55055 Gm15045-201ENSMUST00000117359 883 ntBASIC37.39■■■■□ 3.58
Trdmt1O55055 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC37.17■■■■□ 3.54
Trdmt1O55055 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC37.14■■■■□ 3.54
Trdmt1O55055 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.96■■■■□ 3.51
Trdmt1O55055 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.72■■■■□ 3.47
Trdmt1O55055 Gm23366-201ENSMUST00000175022 89 ntBASIC36.7■■■■□ 3.47
Trdmt1O55055 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.52■■■■□ 3.44
Trdmt1O55055 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
Trdmt1O55055 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
Trdmt1O55055 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.68■■■■□ 3.3
Trdmt1O55055 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.59■■■■□ 3.29
Trdmt1O55055 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.39■■■■□ 3.26
Trdmt1O55055 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35.38■■■■□ 3.25
Trdmt1O55055 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.3■■■■□ 3.24
Trdmt1O55055 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
Trdmt1O55055 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC35.08■■■■□ 3.21
Trdmt1O55055 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
Trdmt1O55055 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.98■■■■□ 3.19
Trdmt1O55055 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
Trdmt1O55055 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Trdmt1O55055 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
Trdmt1O55055 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
Trdmt1O55055 Gm25238-201ENSMUST00000174914 89 ntBASIC34.78■■■■□ 3.16
Trdmt1O55055 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.76■■■■□ 3.16
Trdmt1O55055 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
Trdmt1O55055 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.54■■■■□ 3.12
Trdmt1O55055 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34.53■■■■□ 3.12
Trdmt1O55055 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34.31■■■■□ 3.08
Trdmt1O55055 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
Trdmt1O55055 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC34.08■■■■□ 3.05
Trdmt1O55055 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.06■■■■□ 3.04
Trdmt1O55055 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.86■■■■□ 3.01
Trdmt1O55055 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
Trdmt1O55055 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33.8■■■■□ 3
Trdmt1O55055 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
Trdmt1O55055 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.72■■■□□ 2.99
Trdmt1O55055 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33.68■■■□□ 2.98
Trdmt1O55055 Psd-208ENSMUST00000224556 2034 ntBASIC33.65■■■□□ 2.98
Trdmt1O55055 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.59■■■□□ 2.97
Trdmt1O55055 Gm27325-201ENSMUST00000175467 74 ntBASIC33.51■■■□□ 2.95
Trdmt1O55055 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33.42■■■□□ 2.94
Trdmt1O55055 Gm25262-201ENSMUST00000174934 133 ntBASIC33.38■■■□□ 2.93
Trdmt1O55055 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
Trdmt1O55055 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.21■■■□□ 2.91
Trdmt1O55055 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Trdmt1O55055 Rab21-202ENSMUST00000218831 843 ntBASIC33■■■□□ 2.87
Trdmt1O55055 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Trdmt1O55055 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.96■■■□□ 2.87
Trdmt1O55055 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
Trdmt1O55055 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.93■■■□□ 2.86
Trdmt1O55055 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.9■■■□□ 2.86
Trdmt1O55055 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.9■■■□□ 2.86
Trdmt1O55055 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Trdmt1O55055 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.76■■■□□ 2.83
Trdmt1O55055 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
Trdmt1O55055 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.75■■■□□ 2.83
Trdmt1O55055 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.74■■■□□ 2.83
Trdmt1O55055 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
Trdmt1O55055 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32.63■■■□□ 2.81
Trdmt1O55055 Gm26115-201ENSMUST00000175605 87 ntBASIC32.62■■■□□ 2.81
Trdmt1O55055 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
Trdmt1O55055 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Trdmt1O55055 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32.56■■■□□ 2.8
Trdmt1O55055 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32.49■■■□□ 2.79
Trdmt1O55055 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.47■■■□□ 2.79
Trdmt1O55055 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Trdmt1O55055 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
Trdmt1O55055 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
Trdmt1O55055 Gm8109-201ENSMUST00000194076 746 ntBASIC32.42■■■□□ 2.78
Trdmt1O55055 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Trdmt1O55055 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
Trdmt1O55055 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Trdmt1O55055 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Trdmt1O55055 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.32■■■□□ 2.76
Trdmt1O55055 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
Trdmt1O55055 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32.23■■■□□ 2.75
Trdmt1O55055 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.21■■■□□ 2.75
Trdmt1O55055 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
Trdmt1O55055 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
Trdmt1O55055 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC32.13■■■□□ 2.73
Trdmt1O55055 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC32.06■■■□□ 2.72
Trdmt1O55055 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
Trdmt1O55055 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Trdmt1O55055 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Trdmt1O55055 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Trdmt1O55055 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Trdmt1O55055 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Trdmt1O55055 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Trdmt1O55055 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.89■■■□□ 2.7
Trdmt1O55055 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Trdmt1O55055 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.85■■■□□ 2.69
Trdmt1O55055 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.84■■■□□ 2.69
Trdmt1O55055 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
Trdmt1O55055 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.8■■■□□ 2.68
Trdmt1O55055 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms