Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Hmgb3O54879 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Hmgb3O54879 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Hmgb3O54879 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Hmgb3O54879 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC16.37■□□□□ 0.21
Hmgb3O54879 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Hmgb3O54879 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.37■□□□□ 0.21
Hmgb3O54879 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC16.36■□□□□ 0.21
Hmgb3O54879 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Gm11687-201ENSMUST00000118911 886 ntBASIC16.36■□□□□ 0.21
Hmgb3O54879 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC16.36■□□□□ 0.21
Hmgb3O54879 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.36■□□□□ 0.21
Hmgb3O54879 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Hmgb3O54879 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Hmgb3O54879 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC16.36■□□□□ 0.21
Hmgb3O54879 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Hmgb3O54879 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
Hmgb3O54879 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb3O54879 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb3O54879 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb3O54879 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb3O54879 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb3O54879 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb3O54879 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Hmgb3O54879 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb3O54879 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC16.34■□□□□ 0.21
Hmgb3O54879 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Gm5131-201ENSMUST00000212776 1238 ntBASIC16.34■□□□□ 0.21
Hmgb3O54879 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb3O54879 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC16.33■□□□□ 0.21
Hmgb3O54879 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb3O54879 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb3O54879 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Hmgb3O54879 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Hmgb3O54879 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb3O54879 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb3O54879 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb3O54879 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb3O54879 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb3O54879 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb3O54879 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb3O54879 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.31■□□□□ 0.2
Hmgb3O54879 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb3O54879 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb3O54879 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb3O54879 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC16.31■□□□□ 0.2
Hmgb3O54879 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Hmgb3O54879 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb3O54879 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb3O54879 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb3O54879 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb3O54879 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Hmgb3O54879 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb3O54879 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Hmgb3O54879 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb3O54879 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms