Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC30.77■■■□□ 2.52
CCDC61Q9Y6R9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC61Q9Y6R9 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CCDC61Q9Y6R9 CREM-210ENST00000374721 2020 ntTSL 5 BASIC30.77■■■□□ 2.52
CCDC61Q9Y6R9 NTF6G-201ENST00000591094 616 ntBASIC30.77■■■□□ 2.52
CCDC61Q9Y6R9 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC30.77■■■□□ 2.52
CCDC61Q9Y6R9 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC61Q9Y6R9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC61Q9Y6R9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC30.76■■■□□ 2.52
CCDC61Q9Y6R9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CCDC61Q9Y6R9 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC61Q9Y6R9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC61Q9Y6R9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC61Q9Y6R9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC30.76■■■□□ 2.51
CCDC61Q9Y6R9 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC61Q9Y6R9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC61Q9Y6R9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC61Q9Y6R9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC30.75■■■□□ 2.51
CCDC61Q9Y6R9 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC61Q9Y6R9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC61Q9Y6R9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC30.75■■■□□ 2.51
CCDC61Q9Y6R9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC61Q9Y6R9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC61Q9Y6R9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC30.74■■■□□ 2.51
CCDC61Q9Y6R9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC61Q9Y6R9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC61Q9Y6R9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC30.73■■■□□ 2.51
CCDC61Q9Y6R9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC30.73■■■□□ 2.51
CCDC61Q9Y6R9 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC61Q9Y6R9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC30.73■■■□□ 2.51
CCDC61Q9Y6R9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CCDC61Q9Y6R9 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
CCDC61Q9Y6R9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
CCDC61Q9Y6R9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC30.72■■■□□ 2.51
CCDC61Q9Y6R9 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CCDC61Q9Y6R9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CCDC61Q9Y6R9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC61Q9Y6R9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
CCDC61Q9Y6R9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC61Q9Y6R9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC30.71■■■□□ 2.51
CCDC61Q9Y6R9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
CCDC61Q9Y6R9 NT5C3AP1-201ENST00000394500 1012 ntBASIC30.71■■■□□ 2.51
CCDC61Q9Y6R9 AC105233.4-201ENST00000642045 216 ntBASIC30.71■■■□□ 2.51
CCDC61Q9Y6R9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC61Q9Y6R9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC30.7■■■□□ 2.51
CCDC61Q9Y6R9 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC30.7■■■□□ 2.51
CCDC61Q9Y6R9 AC004911.1-201ENST00000416316 871 ntBASIC30.7■■■□□ 2.51
CCDC61Q9Y6R9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.51
CCDC61Q9Y6R9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
CCDC61Q9Y6R9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC61Q9Y6R9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC30.7■■■□□ 2.5
CCDC61Q9Y6R9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC61Q9Y6R9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC61Q9Y6R9 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 GXYLT1P2-201ENST00000433312 1230 ntBASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC30.69■■■□□ 2.5
CCDC61Q9Y6R9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC61Q9Y6R9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC30.68■■■□□ 2.5
CCDC61Q9Y6R9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC61Q9Y6R9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC30.68■■■□□ 2.5
CCDC61Q9Y6R9 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC61Q9Y6R9 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
CCDC61Q9Y6R9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC61Q9Y6R9 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC30.68■■■□□ 2.5
CCDC61Q9Y6R9 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CCDC61Q9Y6R9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC30.67■■■□□ 2.5
CCDC61Q9Y6R9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC30.67■■■□□ 2.5
CCDC61Q9Y6R9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC30.67■■■□□ 2.5
CCDC61Q9Y6R9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC30.67■■■□□ 2.5
CCDC61Q9Y6R9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CCDC61Q9Y6R9 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CCDC61Q9Y6R9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC61Q9Y6R9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC30.66■■■□□ 2.5
CCDC61Q9Y6R9 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
CCDC61Q9Y6R9 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
CCDC61Q9Y6R9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC61Q9Y6R9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC61Q9Y6R9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC61Q9Y6R9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC61Q9Y6R9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC30.65■■■□□ 2.5
CCDC61Q9Y6R9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC30.65■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms