Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 Z98257.2-202ENST00000641138 1548 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGB1P09429 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HMGB1P09429 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.21■□□□□ 0.19
HMGB1P09429 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGB1P09429 STK24P1-201ENST00000455035 1291 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HMGB1P09429 AC093300.1-201ENST00000510368 1201 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.21■□□□□ 0.19
HMGB1P09429 AC005632.3-201ENST00000605544 308 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 AP001184.1-201ENST00000637936 376 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 AC087164.2-201ENST00000624514 3130 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB1P09429 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB1P09429 GHET1-201ENST00000627071 1906 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 AC027612.1-201ENST00000445234 2395 ntBASIC16.21■□□□□ 0.19
HMGB1P09429 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
HMGB1P09429 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGB1P09429 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HMGB1P09429 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
HMGB1P09429 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HMGB1P09429 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HMGB1P09429 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGB1P09429 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 IGHJ2P-201ENST00000454480 60 ntBASIC16.2■□□□□ 0.18
HMGB1P09429 AC130709.1-201ENST00000484779 1212 ntBASIC16.2■□□□□ 0.18
HMGB1P09429 MRPL22P1-201ENST00000505398 616 ntBASIC16.2■□□□□ 0.18
HMGB1P09429 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.2■□□□□ 0.18
HMGB1P09429 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 SAA2-206ENST00000530400 323 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGB1P09429 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.2■□□□□ 0.18
HMGB1P09429 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGB1P09429 AC103810.10-201ENST00000606504 343 ntBASIC16.2■□□□□ 0.18
HMGB1P09429 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HMGB1P09429 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 SLC7A9-201ENST00000023064 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
HMGB1P09429 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 GOLGA8A-201ENST00000359187 1877 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HMGB1P09429 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB1P09429 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 HNRNPLP1-201ENST00000421896 1501 ntBASIC16.19■□□□□ 0.18
HMGB1P09429 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC16.19■□□□□ 0.18
HMGB1P09429 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 TET3-201ENST00000305799 5174 ntTSL 5 BASIC16.19■□□□□ 0.18
HMGB1P09429 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB1P09429 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms