Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3bQ3ULL6 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.31■■□□□ 1
Upf3bQ3ULL6 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf3bQ3ULL6 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.3■■□□□ 1
Upf3bQ3ULL6 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.3■■□□□ 1
Upf3bQ3ULL6 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Upf3bQ3ULL6 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC21.29■■□□□ 1
Upf3bQ3ULL6 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.29■■□□□ 1
Upf3bQ3ULL6 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Upf3bQ3ULL6 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf3bQ3ULL6 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf3bQ3ULL6 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf3bQ3ULL6 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Upf3bQ3ULL6 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.28■■□□□ 1
Upf3bQ3ULL6 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Upf3bQ3ULL6 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf3bQ3ULL6 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf3bQ3ULL6 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3bQ3ULL6 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Upf3bQ3ULL6 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3bQ3ULL6 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.27■■□□□ 1
Upf3bQ3ULL6 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3bQ3ULL6 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3bQ3ULL6 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf3bQ3ULL6 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Upf3bQ3ULL6 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Gm12821-201ENSMUST00000120022 600 ntBASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Upf3bQ3ULL6 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Gm43137-201ENSMUST00000198052 594 ntBASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf3bQ3ULL6 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Upf3bQ3ULL6 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf3bQ3ULL6 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC21.24■□□□□ 0.99
Upf3bQ3ULL6 Appbp2os-202ENSMUST00000206972 447 ntBASIC21.24■□□□□ 0.99
Upf3bQ3ULL6 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.24■□□□□ 0.99
Upf3bQ3ULL6 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Upf3bQ3ULL6 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Upf3bQ3ULL6 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.24■□□□□ 0.99
Upf3bQ3ULL6 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf3bQ3ULL6 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf3bQ3ULL6 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms