Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RaraP11416 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RaraP11416 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RaraP11416 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RaraP11416 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.57■■□□□ 1.04
RaraP11416 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RaraP11416 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RaraP11416 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
RaraP11416 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RaraP11416 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RaraP11416 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RaraP11416 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
RaraP11416 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RaraP11416 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
RaraP11416 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.56■■□□□ 1.04
RaraP11416 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RaraP11416 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RaraP11416 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
RaraP11416 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
RaraP11416 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.55■■□□□ 1.04
RaraP11416 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.55■■□□□ 1.04
RaraP11416 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
RaraP11416 Gm15820-201ENSMUST00000201566 728 ntBASIC21.55■■□□□ 1.04
RaraP11416 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.55■■□□□ 1.04
RaraP11416 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RaraP11416 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RaraP11416 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RaraP11416 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RaraP11416 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RaraP11416 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RaraP11416 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
RaraP11416 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RaraP11416 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RaraP11416 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RaraP11416 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.54■■□□□ 1.04
RaraP11416 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RaraP11416 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RaraP11416 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.53■■□□□ 1.04
RaraP11416 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RaraP11416 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RaraP11416 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RaraP11416 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RaraP11416 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RaraP11416 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RaraP11416 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.52■■□□□ 1.04
RaraP11416 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.52■■□□□ 1.04
RaraP11416 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC21.52■■□□□ 1.04
RaraP11416 Gm9870-201ENSMUST00000063874 645 ntBASIC21.52■■□□□ 1.04
RaraP11416 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RaraP11416 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.52■■□□□ 1.04
RaraP11416 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
RaraP11416 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
RaraP11416 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RaraP11416 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RaraP11416 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.51■■□□□ 1.03
RaraP11416 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RaraP11416 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RaraP11416 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RaraP11416 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
RaraP11416 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RaraP11416 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
RaraP11416 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
RaraP11416 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RaraP11416 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
RaraP11416 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RaraP11416 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
RaraP11416 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
RaraP11416 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.49■■□□□ 1.03
RaraP11416 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RaraP11416 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.49■■□□□ 1.03
RaraP11416 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RaraP11416 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.49■■□□□ 1.03
RaraP11416 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RaraP11416 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RaraP11416 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.48■■□□□ 1.03
RaraP11416 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
RaraP11416 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.48■■□□□ 1.03
RaraP11416 Gm43530-201ENSMUST00000195920 274 ntBASIC21.48■■□□□ 1.03
RaraP11416 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
RaraP11416 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
RaraP11416 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RaraP11416 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
RaraP11416 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms