Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC39.32■■■■□ 3.89
CCDC88BA6NC98 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC39.32■■■■□ 3.89
CCDC88BA6NC98 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC39.32■■■■□ 3.89
CCDC88BA6NC98 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC39.32■■■■□ 3.89
CCDC88BA6NC98 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC39.32■■■■□ 3.89
CCDC88BA6NC98 EI24-213ENST00000618552 1747 ntTSL 5 BASIC39.32■■■■□ 3.88
CCDC88BA6NC98 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC39.32■■■■□ 3.88
CCDC88BA6NC98 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC39.31■■■■□ 3.88
CCDC88BA6NC98 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC39.31■■■■□ 3.88
CCDC88BA6NC98 LINC02228-203ENST00000641970 1355 ntBASIC39.31■■■■□ 3.88
CCDC88BA6NC98 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC39.3■■■■□ 3.88
CCDC88BA6NC98 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 NT5C3AP1-201ENST00000394500 1012 ntBASIC39.3■■■■□ 3.88
CCDC88BA6NC98 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC39.3■■■■□ 3.88
CCDC88BA6NC98 AP005435.1-201ENST00000529293 1178 ntBASIC39.3■■■■□ 3.88
CCDC88BA6NC98 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC39.29■■■■□ 3.88
CCDC88BA6NC98 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC39.29■■■■□ 3.88
CCDC88BA6NC98 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC39.29■■■■□ 3.88
CCDC88BA6NC98 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC39.29■■■■□ 3.88
CCDC88BA6NC98 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC39.29■■■■□ 3.88
CCDC88BA6NC98 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 FP325331.1-202ENST00000623531 1380 ntBASIC39.28■■■■□ 3.88
CCDC88BA6NC98 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 AC022211.4-201ENST00000625094 2161 ntBASIC39.28■■■■□ 3.88
CCDC88BA6NC98 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 AC135731.1-201ENST00000569415 2548 ntBASIC39.28■■■■□ 3.88
CCDC88BA6NC98 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC39.28■■■■□ 3.88
CCDC88BA6NC98 TMEM202-AS1-202ENST00000565181 2325 ntBASIC39.27■■■■□ 3.88
CCDC88BA6NC98 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC39.27■■■■□ 3.88
CCDC88BA6NC98 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC39.27■■■■□ 3.88
CCDC88BA6NC98 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC39.27■■■■□ 3.88
CCDC88BA6NC98 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC39.27■■■■□ 3.88
CCDC88BA6NC98 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC39.27■■■■□ 3.88
CCDC88BA6NC98 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC39.27■■■■□ 3.88
CCDC88BA6NC98 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC39.26■■■■□ 3.88
CCDC88BA6NC98 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC39.26■■■■□ 3.88
CCDC88BA6NC98 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC39.26■■■■□ 3.88
CCDC88BA6NC98 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC39.26■■■■□ 3.88
CCDC88BA6NC98 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC39.26■■■■□ 3.88
CCDC88BA6NC98 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC39.26■■■■□ 3.88
CCDC88BA6NC98 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC39.26■■■■□ 3.88
CCDC88BA6NC98 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC39.26■■■■□ 3.87
CCDC88BA6NC98 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC39.25■■■■□ 3.87
CCDC88BA6NC98 TPRG1LP1-201ENST00000598702 760 ntBASIC39.25■■■■□ 3.87
CCDC88BA6NC98 RAP2CP1-201ENST00000605103 478 ntBASIC39.25■■■■□ 3.87
CCDC88BA6NC98 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC39.25■■■■□ 3.87
CCDC88BA6NC98 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC39.25■■■■□ 3.87
CCDC88BA6NC98 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC39.25■■■■□ 3.87
CCDC88BA6NC98 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 GXYLT1P2-201ENST00000433312 1230 ntBASIC39.24■■■■□ 3.87
CCDC88BA6NC98 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC39.24■■■■□ 3.87
CCDC88BA6NC98 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC39.23■■■■□ 3.87
CCDC88BA6NC98 MPST-204ENST00000404393 1329 ntTSL 5 BASIC39.23■■■■□ 3.87
CCDC88BA6NC98 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC39.23■■■■□ 3.87
CCDC88BA6NC98 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC39.22■■■■□ 3.87
CCDC88BA6NC98 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC39.22■■■■□ 3.87
CCDC88BA6NC98 AP003733.4-201ENST00000623785 1697 ntBASIC39.22■■■■□ 3.87
CCDC88BA6NC98 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC39.22■■■■□ 3.87
CCDC88BA6NC98 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC39.22■■■■□ 3.87
CCDC88BA6NC98 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC39.22■■■■□ 3.87
CCDC88BA6NC98 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC39.22■■■■□ 3.87
CCDC88BA6NC98 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
CCDC88BA6NC98 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC39.21■■■■□ 3.87
CCDC88BA6NC98 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC39.21■■■■□ 3.87
CCDC88BA6NC98 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC39.21■■■■□ 3.87
CCDC88BA6NC98 AC006015.1-201ENST00000429970 570 ntBASIC39.2■■■■□ 3.87
CCDC88BA6NC98 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC39.2■■■■□ 3.87
CCDC88BA6NC98 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC39.2■■■■□ 3.87
CCDC88BA6NC98 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC39.2■■■■□ 3.87
CCDC88BA6NC98 AC144652.1-201ENST00000609974 1624 ntBASIC39.19■■■■□ 3.86
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms