Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC12.9□□□□□ -0.34
COL5A1P20908 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC12.9□□□□□ -0.34
COL5A1P20908 GAPDHP29-201ENST00000429913 985 ntBASIC12.9□□□□□ -0.34
COL5A1P20908 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC12.9□□□□□ -0.34
COL5A1P20908 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC12.9□□□□□ -0.34
COL5A1P20908 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
COL5A1P20908 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC12.9□□□□□ -0.34
COL5A1P20908 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.35
COL5A1P20908 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
COL5A1P20908 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.89□□□□□ -0.35
COL5A1P20908 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
COL5A1P20908 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
COL5A1P20908 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
COL5A1P20908 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
COL5A1P20908 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL5A1P20908 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
COL5A1P20908 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 MIR1226-201ENST00000408658 75 ntBASIC12.89□□□□□ -0.35
COL5A1P20908 SLC25A15P1-201ENST00000456738 342 ntBASIC12.89□□□□□ -0.35
COL5A1P20908 RN7SL789P-201ENST00000478944 293 ntBASIC12.89□□□□□ -0.35
COL5A1P20908 SLC25A51P3-201ENST00000521814 889 ntBASIC12.89□□□□□ -0.35
COL5A1P20908 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 AC005332.2-201ENST00000590010 930 ntBASIC12.89□□□□□ -0.35
COL5A1P20908 AL109954.3-201ENST00000615088 558 ntBASIC12.89□□□□□ -0.35
COL5A1P20908 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL5A1P20908 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL5A1P20908 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC12.89□□□□□ -0.35
COL5A1P20908 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
COL5A1P20908 AC108024.1-201ENST00000626286 1721 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
COL5A1P20908 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 RPSAP61-201ENST00000412542 878 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 AC005822.1-201ENST00000414124 1034 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC12.88□□□□□ -0.35
COL5A1P20908 NR1I3-210ENST00000437437 973 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 TULP3P1-202ENST00000453253 1291 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 RN7SL794P-201ENST00000469816 280 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC12.88□□□□□ -0.35
COL5A1P20908 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 MST1L-204ENST00000545160 559 ntTSL 4 BASIC12.88□□□□□ -0.35
COL5A1P20908 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC12.88□□□□□ -0.35
COL5A1P20908 AC079336.3-201ENST00000577227 475 ntTSL 3 BASIC12.88□□□□□ -0.35
COL5A1P20908 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC12.88□□□□□ -0.35
COL5A1P20908 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.88□□□□□ -0.35
COL5A1P20908 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 TUBB8P5-201ENST00000445286 1351 ntBASIC12.88□□□□□ -0.35
COL5A1P20908 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
COL5A1P20908 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.88□□□□□ -0.35
COL5A1P20908 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL5A1P20908 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms