Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Pdpk1-202ENSMUST00000102927 7161 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Slc35c1-201ENSMUST00000067631 3139 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Cenpo-202ENSMUST00000111169 1550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Pif1-201ENSMUST00000047099 3685 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Smim6-201ENSMUST00000132961 978 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm4726-201ENSMUST00000135604 736 ntBASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm6019-201ENSMUST00000148369 736 ntBASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Park2-203ENSMUST00000168593 735 ntTSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 CT485606.1-201ENSMUST00000213187 878 ntBASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm9176-201ENSMUST00000219955 1120 ntBASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm6781-201ENSMUST00000038304 1242 ntBASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Calr-201ENSMUST00000003912 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm16070-201ENSMUST00000127328 5210 ntTSL 2 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Arfgap3-201ENSMUST00000067215 2619 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Zfp111-202ENSMUST00000073833 3079 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm21998-201ENSMUST00000117552 1308 ntBASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Gm8899-201ENSMUST00000214635 1332 ntBASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Ncoa2-201ENSMUST00000006037 4897 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Anks1b-203ENSMUST00000099368 2799 ntTSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Cux1-207ENSMUST00000176216 2821 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Itgad-204ENSMUST00000177111 3845 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 AC124561.1-202ENSMUST00000228652 1929 ntBASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Scml4-201ENSMUST00000063063 4885 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Bmpr2-201ENSMUST00000087435 12899 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Syk-202ENSMUST00000118756 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 Zbtb3-201ENSMUST00000172175 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ccdc28aQ8CEI3 A930003O13Rik-202ENSMUST00000197486 3098 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Elmod3-202ENSMUST00000114069 2164 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Plec-206ENSMUST00000074834 14855 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Lss-201ENSMUST00000048678 4667 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Mkrn1-204ENSMUST00000114823 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Lrrc4-201ENSMUST00000062304 3615 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gpm6b-206ENSMUST00000112228 3083 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm37583-201ENSMUST00000195460 2487 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm11949-201ENSMUST00000117640 372 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm16166-201ENSMUST00000118291 787 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm12217-201ENSMUST00000118858 696 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm15197-201ENSMUST00000120526 478 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Mir6927-201ENSMUST00000184494 71 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Mir8115-201ENSMUST00000184992 119 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm42780-201ENSMUST00000197083 734 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm43671-201ENSMUST00000200422 433 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm17831-201ENSMUST00000205579 900 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm7319-201ENSMUST00000210047 778 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm8162-201ENSMUST00000213951 665 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 AC124581.2-201ENSMUST00000225459 282 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Zfp474-201ENSMUST00000072666 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Tex11-202ENSMUST00000113716 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Cckar-202ENSMUST00000200691 3230 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Rnpc3-201ENSMUST00000092154 3888 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Ggct-202ENSMUST00000131475 3960 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 N4bp2-201ENSMUST00000087264 5308 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Pgbd5-206ENSMUST00000172566 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Nkx2-2os-201ENSMUST00000136998 4345 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Mlxipl-201ENSMUST00000005507 3622 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Rims2-204ENSMUST00000226410 3685 ntBASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Oscp1-203ENSMUST00000143712 1473 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Gripap1-203ENSMUST00000115675 3015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Zfp873-203ENSMUST00000209622 2284 ntTSL 2 BASIC11.24□□□□□ -0.61
Ccdc28aQ8CEI3 Dhx34-207ENSMUST00000163968 3801 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms