Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.51■□□□□ 0.55
Nedd8P29595 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.51■□□□□ 0.55
Nedd8P29595 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nedd8P29595 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Nedd8P29595 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Nedd8P29595 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Nedd8P29595 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Nedd8P29595 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.5■□□□□ 0.55
Nedd8P29595 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC18.5■□□□□ 0.55
Nedd8P29595 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Nedd8P29595 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Nedd8P29595 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC18.5■□□□□ 0.55
Nedd8P29595 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Nedd8P29595 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Nedd8P29595 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Nedd8P29595 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Nedd8P29595 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.49■□□□□ 0.55
Nedd8P29595 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
Nedd8P29595 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC18.49■□□□□ 0.55
Nedd8P29595 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Nedd8P29595 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nedd8P29595 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Nedd8P29595 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nedd8P29595 Gm6821-201ENSMUST00000107540 542 ntBASIC18.48■□□□□ 0.55
Nedd8P29595 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Nedd8P29595 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nedd8P29595 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nedd8P29595 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nedd8P29595 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Nedd8P29595 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nedd8P29595 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nedd8P29595 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nedd8P29595 Gm9939-201ENSMUST00000067161 1154 ntBASIC18.47■□□□□ 0.55
Nedd8P29595 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nedd8P29595 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nedd8P29595 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nedd8P29595 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Nedd8P29595 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
Nedd8P29595 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.46■□□□□ 0.55
Nedd8P29595 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nedd8P29595 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nedd8P29595 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Nedd8P29595 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nedd8P29595 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nedd8P29595 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Nedd8P29595 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Nedd8P29595 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Nedd8P29595 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Nedd8P29595 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Nedd8P29595 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.45■□□□□ 0.54
Nedd8P29595 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Nedd8P29595 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Nedd8P29595 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
Nedd8P29595 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Nedd8P29595 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Nedd8P29595 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.44■□□□□ 0.54
Nedd8P29595 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Nedd8P29595 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nedd8P29595 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nedd8P29595 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nedd8P29595 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC18.43■□□□□ 0.54
Nedd8P29595 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.43■□□□□ 0.54
Nedd8P29595 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nedd8P29595 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Nedd8P29595 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nedd8P29595 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Nedd8P29595 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nedd8P29595 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nedd8P29595 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Nedd8P29595 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC18.42■□□□□ 0.54
Nedd8P29595 Pkd1-207ENSMUST00000228550 1050 ntBASIC18.42■□□□□ 0.54
Nedd8P29595 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.42■□□□□ 0.54
Nedd8P29595 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.42■□□□□ 0.54
Nedd8P29595 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Nedd8P29595 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
Nedd8P29595 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nedd8P29595 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Nedd8P29595 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms