Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp6P0C0A3 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Chmp6P0C0A3 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.68■■□□□ 1.06
Chmp6P0C0A3 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp6P0C0A3 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp6P0C0A3 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.66■■□□□ 1.06
Chmp6P0C0A3 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp6P0C0A3 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp6P0C0A3 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp6P0C0A3 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp6P0C0A3 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp6P0C0A3 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.65■■□□□ 1.06
Chmp6P0C0A3 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp6P0C0A3 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp6P0C0A3 Gm21956-201ENSMUST00000179946 522 ntBASIC21.65■■□□□ 1.06
Chmp6P0C0A3 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC21.65■■□□□ 1.06
Chmp6P0C0A3 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp6P0C0A3 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chmp6P0C0A3 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Chmp6P0C0A3 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Chmp6P0C0A3 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
Chmp6P0C0A3 Gm10616-201ENSMUST00000205285 2127 ntBASIC21.64■■□□□ 1.06
Chmp6P0C0A3 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Chmp6P0C0A3 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.63■■□□□ 1.05
Chmp6P0C0A3 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chmp6P0C0A3 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chmp6P0C0A3 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Chmp6P0C0A3 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Chmp6P0C0A3 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Iqck-206ENSMUST00000208658 2891 ntBASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Chmp6P0C0A3 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.59■■□□□ 1.05
Chmp6P0C0A3 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Chmp6P0C0A3 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms