Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22.44■■□□□ 1.18
Col13a1Q9R1N9 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Col13a1Q9R1N9 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Col13a1Q9R1N9 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC22.43■■□□□ 1.18
Col13a1Q9R1N9 Peli2-204ENSMUST00000226513 1320 ntBASIC22.42■■□□□ 1.18
Col13a1Q9R1N9 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Col13a1Q9R1N9 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
Col13a1Q9R1N9 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Col13a1Q9R1N9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
Col13a1Q9R1N9 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC22.39■■□□□ 1.17
Col13a1Q9R1N9 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Col13a1Q9R1N9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col13a1Q9R1N9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col13a1Q9R1N9 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col13a1Q9R1N9 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col13a1Q9R1N9 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
Col13a1Q9R1N9 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Col13a1Q9R1N9 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Col13a1Q9R1N9 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Col13a1Q9R1N9 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Col13a1Q9R1N9 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col13a1Q9R1N9 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col13a1Q9R1N9 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col13a1Q9R1N9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Col13a1Q9R1N9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Col13a1Q9R1N9 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Col13a1Q9R1N9 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col13a1Q9R1N9 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Col13a1Q9R1N9 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Col13a1Q9R1N9 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Col13a1Q9R1N9 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
Col13a1Q9R1N9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Col13a1Q9R1N9 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Col13a1Q9R1N9 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Col13a1Q9R1N9 Gm9397-201ENSMUST00000200125 605 ntBASIC22.2■■□□□ 1.14
Col13a1Q9R1N9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col13a1Q9R1N9 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Col13a1Q9R1N9 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Col13a1Q9R1N9 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Col13a1Q9R1N9 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Col13a1Q9R1N9 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Col13a1Q9R1N9 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Col13a1Q9R1N9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Col13a1Q9R1N9 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Col13a1Q9R1N9 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC22.14■■□□□ 1.13
Col13a1Q9R1N9 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
Col13a1Q9R1N9 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Col13a1Q9R1N9 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC22.12■■□□□ 1.13
Col13a1Q9R1N9 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22.11■■□□□ 1.13
Col13a1Q9R1N9 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC22.11■■□□□ 1.13
Col13a1Q9R1N9 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC22.11■■□□□ 1.13
Col13a1Q9R1N9 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Col13a1Q9R1N9 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
Col13a1Q9R1N9 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC22.07■■□□□ 1.12
Col13a1Q9R1N9 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Col13a1Q9R1N9 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC22.07■■□□□ 1.12
Col13a1Q9R1N9 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Col13a1Q9R1N9 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Col13a1Q9R1N9 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.04■■□□□ 1.12
Col13a1Q9R1N9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Col13a1Q9R1N9 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Col13a1Q9R1N9 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Col13a1Q9R1N9 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC22.01■■□□□ 1.11
Col13a1Q9R1N9 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col13a1Q9R1N9 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Col13a1Q9R1N9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col13a1Q9R1N9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col13a1Q9R1N9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col13a1Q9R1N9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Col13a1Q9R1N9 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.94■■□□□ 1.1
Col13a1Q9R1N9 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.93■■□□□ 1.1
Col13a1Q9R1N9 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.93■■□□□ 1.1
Col13a1Q9R1N9 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col13a1Q9R1N9 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col13a1Q9R1N9 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC21.92■■□□□ 1.1
Col13a1Q9R1N9 Gm9939-201ENSMUST00000067161 1154 ntBASIC21.92■■□□□ 1.1
Col13a1Q9R1N9 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Col13a1Q9R1N9 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Col13a1Q9R1N9 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Col13a1Q9R1N9 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Col13a1Q9R1N9 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC21.87■■□□□ 1.09
Col13a1Q9R1N9 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col13a1Q9R1N9 Mipep-204ENSMUST00000225043 1548 ntBASIC21.85■■□□□ 1.09
Col13a1Q9R1N9 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col13a1Q9R1N9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col13a1Q9R1N9 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Col13a1Q9R1N9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col13a1Q9R1N9 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.8■■□□□ 1.08
Col13a1Q9R1N9 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col13a1Q9R1N9 Gm8503-201ENSMUST00000118131 455 ntBASIC21.79■■□□□ 1.08
Col13a1Q9R1N9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col13a1Q9R1N9 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Col13a1Q9R1N9 Gm24970-201ENSMUST00000175582 82 ntBASIC21.77■■□□□ 1.08
Col13a1Q9R1N9 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col13a1Q9R1N9 Gm6821-201ENSMUST00000107540 542 ntBASIC21.73■■□□□ 1.07
Col13a1Q9R1N9 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col13a1Q9R1N9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Col13a1Q9R1N9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col13a1Q9R1N9 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col13a1Q9R1N9 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms