Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC32.23■■■□□ 2.75
Upf1Q9EPU0 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
Upf1Q9EPU0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
Upf1Q9EPU0 Psd-208ENSMUST00000224556 2034 ntBASIC32.19■■■□□ 2.74
Upf1Q9EPU0 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Upf1Q9EPU0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Upf1Q9EPU0 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC32.11■■■□□ 2.73
Upf1Q9EPU0 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC32.1■■■□□ 2.73
Upf1Q9EPU0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Upf1Q9EPU0 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Upf1Q9EPU0 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
Upf1Q9EPU0 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
Upf1Q9EPU0 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
Upf1Q9EPU0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
Upf1Q9EPU0 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC31.97■■■□□ 2.71
Upf1Q9EPU0 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC31.96■■■□□ 2.71
Upf1Q9EPU0 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
Upf1Q9EPU0 Gm8503-201ENSMUST00000118131 455 ntBASIC31.95■■■□□ 2.71
Upf1Q9EPU0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Upf1Q9EPU0 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31.94■■■□□ 2.7
Upf1Q9EPU0 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC31.94■■■□□ 2.7
Upf1Q9EPU0 Gm9939-201ENSMUST00000067161 1154 ntBASIC31.93■■■□□ 2.7
Upf1Q9EPU0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC31.91■■■□□ 2.7
Upf1Q9EPU0 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Upf1Q9EPU0 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Upf1Q9EPU0 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Upf1Q9EPU0 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Upf1Q9EPU0 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC31.78■■■□□ 2.68
Upf1Q9EPU0 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC31.7■■■□□ 2.67
Upf1Q9EPU0 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC31.67■■■□□ 2.66
Upf1Q9EPU0 Gm24970-201ENSMUST00000175582 82 ntBASIC31.66■■■□□ 2.66
Upf1Q9EPU0 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC31.65■■■□□ 2.66
Upf1Q9EPU0 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
Upf1Q9EPU0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Upf1Q9EPU0 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.65■■■□□ 2.66
Upf1Q9EPU0 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.63■■■□□ 2.65
Upf1Q9EPU0 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Upf1Q9EPU0 Gm6821-201ENSMUST00000107540 542 ntBASIC31.62■■■□□ 2.65
Upf1Q9EPU0 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
Upf1Q9EPU0 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Upf1Q9EPU0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Upf1Q9EPU0 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Upf1Q9EPU0 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Upf1Q9EPU0 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC31.56■■■□□ 2.64
Upf1Q9EPU0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Upf1Q9EPU0 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Upf1Q9EPU0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.52■■■□□ 2.64
Upf1Q9EPU0 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC31.51■■■□□ 2.64
Upf1Q9EPU0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Upf1Q9EPU0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31.51■■■□□ 2.63
Upf1Q9EPU0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Upf1Q9EPU0 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Upf1Q9EPU0 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Upf1Q9EPU0 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC31.4■■■□□ 2.62
Upf1Q9EPU0 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Upf1Q9EPU0 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Upf1Q9EPU0 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Upf1Q9EPU0 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Upf1Q9EPU0 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC31.31■■■□□ 2.6
Upf1Q9EPU0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Upf1Q9EPU0 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
Upf1Q9EPU0 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC31.29■■■□□ 2.6
Upf1Q9EPU0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Upf1Q9EPU0 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC31.26■■■□□ 2.59
Upf1Q9EPU0 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Upf1Q9EPU0 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC31.14■■■□□ 2.58
Upf1Q9EPU0 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Upf1Q9EPU0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Upf1Q9EPU0 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Upf1Q9EPU0 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC31.08■■■□□ 2.57
Upf1Q9EPU0 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC31.08■■■□□ 2.57
Upf1Q9EPU0 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Upf1Q9EPU0 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
Upf1Q9EPU0 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Upf1Q9EPU0 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Upf1Q9EPU0 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC31.04■■■□□ 2.56
Upf1Q9EPU0 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Upf1Q9EPU0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC31.03■■■□□ 2.56
Upf1Q9EPU0 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
Upf1Q9EPU0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Upf1Q9EPU0 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Upf1Q9EPU0 Mir6538-201ENSMUST00000183713 110 ntBASIC30.97■■■□□ 2.55
Upf1Q9EPU0 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC30.97■■■□□ 2.55
Upf1Q9EPU0 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Upf1Q9EPU0 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Upf1Q9EPU0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC30.95■■■□□ 2.55
Upf1Q9EPU0 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC30.95■■■□□ 2.55
Upf1Q9EPU0 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
Upf1Q9EPU0 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
Upf1Q9EPU0 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Upf1Q9EPU0 Mipep-204ENSMUST00000225043 1548 ntBASIC30.93■■■□□ 2.54
Upf1Q9EPU0 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Upf1Q9EPU0 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
Upf1Q9EPU0 Gm15039-201ENSMUST00000118914 875 ntBASIC30.91■■■□□ 2.54
Upf1Q9EPU0 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC30.91■■■□□ 2.54
Upf1Q9EPU0 Gm7432-201ENSMUST00000210343 879 ntBASIC30.91■■■□□ 2.54
Upf1Q9EPU0 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Upf1Q9EPU0 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
Upf1Q9EPU0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Upf1Q9EPU0 Gm42809-201ENSMUST00000198429 1138 ntBASIC30.9■■■□□ 2.54
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms