Protein–RNA interactions for Protein: Q99MQ5

Col25a1, Collagen alpha-1(XXV) chain, mousemouse

Predictions only

Length 666 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col25a1Q99MQ5 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC28.14■■■□□ 2.09
Col25a1Q99MQ5 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
Col25a1Q99MQ5 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.11■■■□□ 2.09
Col25a1Q99MQ5 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Col25a1Q99MQ5 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Col25a1Q99MQ5 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Col25a1Q99MQ5 Gm9397-201ENSMUST00000200125 605 ntBASIC28.05■■■□□ 2.08
Col25a1Q99MQ5 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Col25a1Q99MQ5 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Col25a1Q99MQ5 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.03■■■□□ 2.08
Col25a1Q99MQ5 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Col25a1Q99MQ5 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Col25a1Q99MQ5 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC27.98■■■□□ 2.07
Col25a1Q99MQ5 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Col25a1Q99MQ5 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
Col25a1Q99MQ5 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Col25a1Q99MQ5 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC27.9■■■□□ 2.06
Col25a1Q99MQ5 Gm8503-201ENSMUST00000118131 455 ntBASIC27.89■■■□□ 2.06
Col25a1Q99MQ5 Gm9939-201ENSMUST00000067161 1154 ntBASIC27.89■■■□□ 2.06
Col25a1Q99MQ5 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC27.89■■■□□ 2.05
Col25a1Q99MQ5 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Col25a1Q99MQ5 AL845457.1-201ENSMUST00000197244 68 ntBASIC27.82■■■□□ 2.04
Col25a1Q99MQ5 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC27.81■■■□□ 2.04
Col25a1Q99MQ5 Peli2-204ENSMUST00000226513 1320 ntBASIC27.81■■■□□ 2.04
Col25a1Q99MQ5 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Col25a1Q99MQ5 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Col25a1Q99MQ5 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Col25a1Q99MQ5 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Col25a1Q99MQ5 Gm15039-201ENSMUST00000118914 875 ntBASIC27.74■■■□□ 2.03
Col25a1Q99MQ5 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC27.73■■■□□ 2.03
Col25a1Q99MQ5 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC27.71■■■□□ 2.03
Col25a1Q99MQ5 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Col25a1Q99MQ5 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Col25a1Q99MQ5 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.03
Col25a1Q99MQ5 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Col25a1Q99MQ5 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27.7■■■□□ 2.02
Col25a1Q99MQ5 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
Col25a1Q99MQ5 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Col25a1Q99MQ5 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC27.61■■■□□ 2.01
Col25a1Q99MQ5 Gm6821-201ENSMUST00000107540 542 ntBASIC27.6■■■□□ 2.01
Col25a1Q99MQ5 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
Col25a1Q99MQ5 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Col25a1Q99MQ5 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC27.53■■■□□ 2
Col25a1Q99MQ5 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC27.53■■■□□ 2
Col25a1Q99MQ5 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Col25a1Q99MQ5 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Col25a1Q99MQ5 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC27.5■■□□□ 1.99
Col25a1Q99MQ5 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC27.5■■□□□ 1.99
Col25a1Q99MQ5 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Col25a1Q99MQ5 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC27.48■■□□□ 1.99
Col25a1Q99MQ5 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Col25a1Q99MQ5 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Col25a1Q99MQ5 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC27.42■■□□□ 1.98
Col25a1Q99MQ5 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.41■■□□□ 1.98
Col25a1Q99MQ5 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Col25a1Q99MQ5 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Col25a1Q99MQ5 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC27.39■■□□□ 1.98
Col25a1Q99MQ5 Gm24970-201ENSMUST00000175582 82 ntBASIC27.39■■□□□ 1.98
Col25a1Q99MQ5 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Col25a1Q99MQ5 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC27.37■■□□□ 1.97
Col25a1Q99MQ5 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
Col25a1Q99MQ5 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC27.35■■□□□ 1.97
Col25a1Q99MQ5 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Col25a1Q99MQ5 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC27.34■■□□□ 1.97
Col25a1Q99MQ5 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.33■■□□□ 1.97
Col25a1Q99MQ5 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
Col25a1Q99MQ5 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC27.3■■□□□ 1.96
Col25a1Q99MQ5 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC27.27■■□□□ 1.96
Col25a1Q99MQ5 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
Col25a1Q99MQ5 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC27.26■■□□□ 1.95
Col25a1Q99MQ5 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
Col25a1Q99MQ5 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Col25a1Q99MQ5 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
Col25a1Q99MQ5 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.21■■□□□ 1.95
Col25a1Q99MQ5 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Col25a1Q99MQ5 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Col25a1Q99MQ5 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Col25a1Q99MQ5 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC27.18■■□□□ 1.94
Col25a1Q99MQ5 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
Col25a1Q99MQ5 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC27.18■■□□□ 1.94
Col25a1Q99MQ5 Mir6538-201ENSMUST00000183713 110 ntBASIC27.17■■□□□ 1.94
Col25a1Q99MQ5 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Col25a1Q99MQ5 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC27.16■■□□□ 1.94
Col25a1Q99MQ5 Cap2-205ENSMUST00000225824 1634 ntBASIC27.15■■□□□ 1.94
Col25a1Q99MQ5 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Col25a1Q99MQ5 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC27.14■■□□□ 1.94
Col25a1Q99MQ5 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC27.09■■□□□ 1.93
Col25a1Q99MQ5 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Col25a1Q99MQ5 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27.08■■□□□ 1.93
Col25a1Q99MQ5 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Col25a1Q99MQ5 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Col25a1Q99MQ5 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
Col25a1Q99MQ5 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Col25a1Q99MQ5 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Col25a1Q99MQ5 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Col25a1Q99MQ5 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Col25a1Q99MQ5 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
Col25a1Q99MQ5 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC27■■□□□ 1.91
Col25a1Q99MQ5 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC27■■□□□ 1.91
Col25a1Q99MQ5 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Retrieved 100 of 76,532 protein–RNA pairs in 8.6 ms