Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Rif1Q6PR54 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Rif1Q6PR54 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC23.4■■□□□ 1.34
Rif1Q6PR54 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Rif1Q6PR54 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Rif1Q6PR54 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.33
Rif1Q6PR54 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC23.31■■□□□ 1.32
Rif1Q6PR54 Peli2-204ENSMUST00000226513 1320 ntBASIC23.3■■□□□ 1.32
Rif1Q6PR54 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Rif1Q6PR54 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
Rif1Q6PR54 Gm9939-201ENSMUST00000067161 1154 ntBASIC23.25■■□□□ 1.31
Rif1Q6PR54 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.23■■□□□ 1.31
Rif1Q6PR54 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Rif1Q6PR54 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
Rif1Q6PR54 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC23.16■■□□□ 1.3
Rif1Q6PR54 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Rif1Q6PR54 Psd-208ENSMUST00000224556 2034 ntBASIC23.12■■□□□ 1.29
Rif1Q6PR54 Gm6821-201ENSMUST00000107540 542 ntBASIC23.11■■□□□ 1.29
Rif1Q6PR54 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Rif1Q6PR54 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Rif1Q6PR54 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Rif1Q6PR54 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC23.09■■□□□ 1.29
Rif1Q6PR54 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Rif1Q6PR54 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Rif1Q6PR54 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Rif1Q6PR54 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC23.06■■□□□ 1.28
Rif1Q6PR54 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Rif1Q6PR54 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC23.04■■□□□ 1.28
Rif1Q6PR54 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC23.04■■□□□ 1.28
Rif1Q6PR54 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Rif1Q6PR54 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC23■■□□□ 1.27
Rif1Q6PR54 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Rif1Q6PR54 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Rif1Q6PR54 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.98■■□□□ 1.27
Rif1Q6PR54 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC22.98■■□□□ 1.27
Rif1Q6PR54 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
Rif1Q6PR54 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
Rif1Q6PR54 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22.96■■□□□ 1.27
Rif1Q6PR54 Gm7432-201ENSMUST00000210343 879 ntBASIC22.95■■□□□ 1.26
Rif1Q6PR54 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Rif1Q6PR54 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Rif1Q6PR54 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Rif1Q6PR54 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22.94■■□□□ 1.26
Rif1Q6PR54 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Rif1Q6PR54 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Rif1Q6PR54 Gm24970-201ENSMUST00000175582 82 ntBASIC22.91■■□□□ 1.26
Rif1Q6PR54 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
Rif1Q6PR54 Mir6538-201ENSMUST00000183713 110 ntBASIC22.88■■□□□ 1.25
Rif1Q6PR54 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Rif1Q6PR54 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC22.84■■□□□ 1.25
Rif1Q6PR54 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Rif1Q6PR54 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
Rif1Q6PR54 Cap2-205ENSMUST00000225824 1634 ntBASIC22.81■■□□□ 1.24
Rif1Q6PR54 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Rif1Q6PR54 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
Rif1Q6PR54 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC22.77■■□□□ 1.24
Rif1Q6PR54 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Rif1Q6PR54 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC22.76■■□□□ 1.23
Rif1Q6PR54 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Rif1Q6PR54 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.74■■□□□ 1.23
Rif1Q6PR54 Gm11175-201ENSMUST00000116172 543 ntBASIC22.72■■□□□ 1.23
Rif1Q6PR54 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.72■■□□□ 1.23
Rif1Q6PR54 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.72■■□□□ 1.23
Rif1Q6PR54 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
Rif1Q6PR54 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22.7■■□□□ 1.23
Rif1Q6PR54 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC22.69■■□□□ 1.22
Rif1Q6PR54 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Rif1Q6PR54 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Rif1Q6PR54 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Rif1Q6PR54 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Rif1Q6PR54 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Rif1Q6PR54 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Rif1Q6PR54 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Rif1Q6PR54 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Rif1Q6PR54 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.21
Rif1Q6PR54 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Rif1Q6PR54 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC22.63■■□□□ 1.21
Rif1Q6PR54 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Rif1Q6PR54 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
Rif1Q6PR54 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Rif1Q6PR54 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.2
Rif1Q6PR54 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC22.57■■□□□ 1.2
Rif1Q6PR54 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Rif1Q6PR54 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
Rif1Q6PR54 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22.55■■□□□ 1.2
Rif1Q6PR54 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Rif1Q6PR54 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC22.54■■□□□ 1.2
Rif1Q6PR54 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Rif1Q6PR54 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22.51■■□□□ 1.19
Rif1Q6PR54 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Rif1Q6PR54 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.5■■□□□ 1.19
Rif1Q6PR54 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Rif1Q6PR54 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Rif1Q6PR54 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Rif1Q6PR54 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Rif1Q6PR54 Gm11599-201ENSMUST00000118720 878 ntBASIC22.46■■□□□ 1.19
Rif1Q6PR54 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Rif1Q6PR54 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Rif1Q6PR54 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Rif1Q6PR54 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC22.43■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms