Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31,23■■■□□ 2,59
Col11a1Q61245 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC31,22■■■□□ 2,59
Col11a1Q61245 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC31,21■■■□□ 2,59
Col11a1Q61245 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC31,2■■■□□ 2,59
Col11a1Q61245 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC31,2■■■□□ 2,59
Col11a1Q61245 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31,19■■■□□ 2,58
Col11a1Q61245 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC31,16■■■□□ 2,58
Col11a1Q61245 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC31,14■■■□□ 2,58
Col11a1Q61245 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC31,11■■■□□ 2,57
Col11a1Q61245 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC31,09■■■□□ 2,57
Col11a1Q61245 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC31,08■■■□□ 2,57
Col11a1Q61245 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC31,08■■■□□ 2,57
Col11a1Q61245 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC31,03■■■□□ 2,56
Col11a1Q61245 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC31,02■■■□□ 2,56
Col11a1Q61245 Gm9397-201ENSMUST00000200125 605 ntBASIC31,01■■■□□ 2,56
Col11a1Q61245 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC30,97■■■□□ 2,55
Col11a1Q61245 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC30,97■■■□□ 2,55
Col11a1Q61245 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC30,96■■■□□ 2,55
Col11a1Q61245 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC30,95■■■□□ 2,54
Col11a1Q61245 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30,94■■■□□ 2,54
Col11a1Q61245 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30,94■■■□□ 2,54
Col11a1Q61245 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC30,9■■■□□ 2,54
Col11a1Q61245 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC30,9■■■□□ 2,54
Col11a1Q61245 Mipep-204ENSMUST00000225043 1548 ntBASIC30,9■■■□□ 2,54
Col11a1Q61245 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC30,87■■■□□ 2,53
Col11a1Q61245 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC30,87■■■□□ 2,53
Col11a1Q61245 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC30,87■■■□□ 2,53
Col11a1Q61245 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC30,86■■■□□ 2,53
Col11a1Q61245 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC30,86■■■□□ 2,53
Col11a1Q61245 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC30,86■■■□□ 2,53
Col11a1Q61245 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC30,84■■■□□ 2,53
Col11a1Q61245 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC30,84■■■□□ 2,53
Col11a1Q61245 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC30,81■■■□□ 2,52
Col11a1Q61245 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC30,8■■■□□ 2,52
Col11a1Q61245 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC30,79■■■□□ 2,52
Col11a1Q61245 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC30,78■■■□□ 2,52
Col11a1Q61245 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC30,77■■■□□ 2,52
Col11a1Q61245 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC30,77■■■□□ 2,52
Col11a1Q61245 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC30,77■■■□□ 2,52
Col11a1Q61245 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC30,77■■■□□ 2,52
Col11a1Q61245 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC30,77■■■□□ 2,52
Col11a1Q61245 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC30,77■■■□□ 2,52
Col11a1Q61245 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC30,77■■■□□ 2,52
Col11a1Q61245 Gm5987-201ENSMUST00000196433 1151 ntBASIC30,76■■■□□ 2,51
Col11a1Q61245 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC30,74■■■□□ 2,51
Col11a1Q61245 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC30,73■■■□□ 2,51
Col11a1Q61245 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC30,73■■■□□ 2,51
Col11a1Q61245 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC30,72■■■□□ 2,51
Col11a1Q61245 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC30,71■■■□□ 2,51
Col11a1Q61245 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC30,7■■■□□ 2,5
Col11a1Q61245 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC30,65■■■□□ 2,5
Col11a1Q61245 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC30,65■■■□□ 2,5
Col11a1Q61245 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC30,64■■■□□ 2,5
Col11a1Q61245 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC30,63■■■□□ 2,49
Col11a1Q61245 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC30,62■■■□□ 2,49
Col11a1Q61245 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC30,61■■■□□ 2,49
Col11a1Q61245 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC30,58■■■□□ 2,49
Col11a1Q61245 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC30,58■■■□□ 2,49
Col11a1Q61245 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC30,57■■■□□ 2,48
Col11a1Q61245 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC30,56■■■□□ 2,48
Col11a1Q61245 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC30,56■■■□□ 2,48
Col11a1Q61245 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC30,53■■■□□ 2,48
Col11a1Q61245 Gm24970-201ENSMUST00000175582 82 ntBASIC30,5■■■□□ 2,47
Col11a1Q61245 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC30,5■■■□□ 2,47
Col11a1Q61245 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC30,5■■■□□ 2,47
Col11a1Q61245 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30,47■■■□□ 2,47
Col11a1Q61245 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC30,45■■■□□ 2,46
Col11a1Q61245 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC30,43■■■□□ 2,46
Col11a1Q61245 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC30,39■■■□□ 2,46
Col11a1Q61245 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC30,38■■■□□ 2,45
Col11a1Q61245 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC30,37■■■□□ 2,45
Col11a1Q61245 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC30,37■■■□□ 2,45
Col11a1Q61245 Gm9939-201ENSMUST00000067161 1154 ntBASIC30,35■■■□□ 2,45
Col11a1Q61245 Gm8503-201ENSMUST00000118131 455 ntBASIC30,33■■■□□ 2,45
Col11a1Q61245 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC30,33■■■□□ 2,45
Col11a1Q61245 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC30,33■■■□□ 2,45
Col11a1Q61245 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC30,31■■■□□ 2,44
Col11a1Q61245 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC30,31■■■□□ 2,44
Col11a1Q61245 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC30,26■■■□□ 2,44
Col11a1Q61245 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC30,24■■■□□ 2,43
Col11a1Q61245 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC30,24■■■□□ 2,43
Col11a1Q61245 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC30,24■■■□□ 2,43
Col11a1Q61245 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC30,21■■■□□ 2,43
Col11a1Q61245 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC30,21■■■□□ 2,43
Col11a1Q61245 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC30,21■■■□□ 2,43
Col11a1Q61245 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC30,21■■■□□ 2,43
Col11a1Q61245 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC30,19■■■□□ 2,42
Col11a1Q61245 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC30,19■■■□□ 2,42
Col11a1Q61245 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC30,18■■■□□ 2,42
Col11a1Q61245 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC30,17■■■□□ 2,42
Col11a1Q61245 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC30,14■■■□□ 2,41
Col11a1Q61245 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC30,13■■■□□ 2,41
Col11a1Q61245 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC30,12■■■□□ 2,41
Col11a1Q61245 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC30,11■■■□□ 2,41
Col11a1Q61245 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC30,11■■■□□ 2,41
Col11a1Q61245 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC30,1■■■□□ 2,41
Col11a1Q61245 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC30,1■■■□□ 2,41
Col11a1Q61245 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC30,1■■■□□ 2,41
Col11a1Q61245 Gm6821-201ENSMUST00000107540 542 ntBASIC30,08■■■□□ 2,41
Col11a1Q61245 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC30,08■■■□□ 2,41
Retrieved 100 of 76,532 protein–RNA pairs in 30,1 ms