Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Slc6a1P31648 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.3■■□□□ 1.16
Slc6a1P31648 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Slc6a1P31648 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Slc6a1P31648 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Slc6a1P31648 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.26■■□□□ 1.15
Slc6a1P31648 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Slc6a1P31648 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Slc6a1P31648 Gm25262-201ENSMUST00000174934 133 ntBASIC22.25■■□□□ 1.15
Slc6a1P31648 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Slc6a1P31648 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Slc6a1P31648 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Slc6a1P31648 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Slc6a1P31648 Rab21-202ENSMUST00000218831 843 ntBASIC22.2■■□□□ 1.14
Slc6a1P31648 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Slc6a1P31648 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Slc6a1P31648 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Slc6a1P31648 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Slc6a1P31648 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
Slc6a1P31648 Gm43445-201ENSMUST00000198564 2091 ntBASIC22.18■■□□□ 1.14
Slc6a1P31648 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Slc6a1P31648 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Slc6a1P31648 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Slc6a1P31648 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Slc6a1P31648 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Slc6a1P31648 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC22.12■■□□□ 1.13
Slc6a1P31648 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Slc6a1P31648 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Slc6a1P31648 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Slc6a1P31648 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Slc6a1P31648 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Slc6a1P31648 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Slc6a1P31648 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Slc6a1P31648 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Slc6a1P31648 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Slc6a1P31648 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Slc6a1P31648 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Slc6a1P31648 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC22.03■■□□□ 1.12
Slc6a1P31648 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Slc6a1P31648 Zfp131-207ENSMUST00000224946 1783 ntBASIC22.02■■□□□ 1.11
Slc6a1P31648 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Slc6a1P31648 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Slc6a1P31648 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC21.99■■□□□ 1.11
Slc6a1P31648 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Slc6a1P31648 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Slc6a1P31648 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Slc6a1P31648 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Slc6a1P31648 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Slc6a1P31648 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Slc6a1P31648 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Slc6a1P31648 Amer2-203ENSMUST00000225247 2662 ntBASIC21.94■■□□□ 1.1
Slc6a1P31648 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Slc6a1P31648 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Slc6a1P31648 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Slc6a1P31648 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.92■■□□□ 1.1
Slc6a1P31648 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Slc6a1P31648 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Slc6a1P31648 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Slc6a1P31648 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC21.9■■□□□ 1.1
Slc6a1P31648 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Slc6a1P31648 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.87■■□□□ 1.09
Slc6a1P31648 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.87■■□□□ 1.09
Slc6a1P31648 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Slc6a1P31648 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Slc6a1P31648 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Slc6a1P31648 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC21.84■■□□□ 1.09
Slc6a1P31648 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
Slc6a1P31648 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Slc6a1P31648 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
Slc6a1P31648 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Slc6a1P31648 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Slc6a1P31648 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Slc6a1P31648 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Slc6a1P31648 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Slc6a1P31648 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Slc6a1P31648 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Slc6a1P31648 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC21.78■■□□□ 1.08
Slc6a1P31648 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Slc6a1P31648 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Slc6a1P31648 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Slc6a1P31648 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Slc6a1P31648 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Slc6a1P31648 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Slc6a1P31648 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Slc6a1P31648 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Slc6a1P31648 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Slc6a1P31648 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Slc6a1P31648 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Slc6a1P31648 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Slc6a1P31648 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Slc6a1P31648 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Slc6a1P31648 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Slc6a1P31648 Gm26115-201ENSMUST00000175605 87 ntBASIC21.67■■□□□ 1.06
Slc6a1P31648 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21.66■■□□□ 1.06
Slc6a1P31648 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.66■■□□□ 1.06
Slc6a1P31648 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Slc6a1P31648 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Slc6a1P31648 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21.65■■□□□ 1.06
Slc6a1P31648 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Slc6a1P31648 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms