Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Hoxd3P09027 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hoxd3P09027 Peli2-204ENSMUST00000226513 1320 ntBASIC20.36■□□□□ 0.85
Hoxd3P09027 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Hoxd3P09027 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hoxd3P09027 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Hoxd3P09027 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC20.34■□□□□ 0.85
Hoxd3P09027 Gm16148-201ENSMUST00000119653 893 ntBASIC20.33■□□□□ 0.85
Hoxd3P09027 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Hoxd3P09027 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Hoxd3P09027 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Hoxd3P09027 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Hoxd3P09027 Zfp131-205ENSMUST00000223812 663 ntBASIC20.3■□□□□ 0.84
Hoxd3P09027 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.3■□□□□ 0.84
Hoxd3P09027 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hoxd3P09027 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hoxd3P09027 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hoxd3P09027 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hoxd3P09027 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Hoxd3P09027 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hoxd3P09027 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Hoxd3P09027 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Hoxd3P09027 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Hoxd3P09027 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Hoxd3P09027 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC20.21■□□□□ 0.83
Hoxd3P09027 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Hoxd3P09027 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Hoxd3P09027 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Hoxd3P09027 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC20.14■□□□□ 0.81
Hoxd3P09027 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Hoxd3P09027 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Hoxd3P09027 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Hoxd3P09027 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Hoxd3P09027 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC20.13■□□□□ 0.81
Hoxd3P09027 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Hoxd3P09027 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Hoxd3P09027 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
Hoxd3P09027 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Hoxd3P09027 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Hoxd3P09027 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC20.08■□□□□ 0.81
Hoxd3P09027 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Hoxd3P09027 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Hoxd3P09027 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.06■□□□□ 0.8
Hoxd3P09027 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hoxd3P09027 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Hoxd3P09027 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Hoxd3P09027 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hoxd3P09027 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Hoxd3P09027 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hoxd3P09027 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC20.02■□□□□ 0.8
Hoxd3P09027 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Hoxd3P09027 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
Hoxd3P09027 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Hoxd3P09027 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Hoxd3P09027 Tdp2-203ENSMUST00000223804 1136 ntBASIC19.96■□□□□ 0.79
Hoxd3P09027 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Hoxd3P09027 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Hoxd3P09027 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Hoxd3P09027 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC19.94■□□□□ 0.78
Hoxd3P09027 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Hoxd3P09027 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Hoxd3P09027 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Hoxd3P09027 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Hoxd3P09027 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hoxd3P09027 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC19.91■□□□□ 0.78
Hoxd3P09027 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hoxd3P09027 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Hoxd3P09027 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hoxd3P09027 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC19.89■□□□□ 0.77
Hoxd3P09027 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hoxd3P09027 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hoxd3P09027 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Hoxd3P09027 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hoxd3P09027 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hoxd3P09027 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
Hoxd3P09027 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hoxd3P09027 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hoxd3P09027 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.82■□□□□ 0.76
Hoxd3P09027 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
Hoxd3P09027 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hoxd3P09027 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hoxd3P09027 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hoxd3P09027 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Hoxd3P09027 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hoxd3P09027 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hoxd3P09027 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hoxd3P09027 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.78■□□□□ 0.76
Hoxd3P09027 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hoxd3P09027 Gm45855-201ENSMUST00000212546 880 ntBASIC19.76■□□□□ 0.75
Hoxd3P09027 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.75■□□□□ 0.75
Hoxd3P09027 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
Hoxd3P09027 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Hoxd3P09027 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hoxd3P09027 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxd3P09027 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hoxd3P09027 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC19.73■□□□□ 0.75
Hoxd3P09027 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hoxd3P09027 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Hoxd3P09027 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Hoxd3P09027 Gm9397-201ENSMUST00000200125 605 ntBASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms